Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01537 ATGGTCCTACCAAGACCAAGATCACGGCCGGCAAGAACTTCAAGGACCTGGGTCATGATGATTGGAGATGGTCCTACCAAGACCAAGATCACGGCCGGCAAGAACTTCAAGGATGGAACATCCACATTCAAAACTGCTACCTTTGCGGCGGTTGGAACCAACTTCATTGGAAAAGACTTGTGGTTCGAGAACTCTGCTGGGCCTGAGAAACACCAGGCTGTGGCACTCCGAGTTCAATCAGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTCTCTACACCCATGCTCATCGTCAATTCTTTCGAGATTGCACCATCACTGGTACCATTGATTTCATCTTTGGCAATGCTGCTGTCATCTTACAGAATTGTAAGATATTTGTGAGGAAGCCAATGGAGAATCAAAAATGCATCGTCACTGCTCAAGGTCGGCTCGAGAGGAAAGAGCCCACTGGTATCGTCCTCCAAAATTGCGCCATCTCTTCTGACCCTGGCTTCTTCCCCGTCCGCCATGTCTTCAAGACCTACCTTGGCCGCCCATGGAAGCAGTATTCAAGAACCATCATCATGCGTCCGCCATGTCTTCAAGACCTACCTTGGCCGCCCATGGAAGCAGTATTCAAGAACCATCATCATGCAATGCCAAATTGA 666 48.35 MVLPRPRSRPARTSRTWVMMIGDGPTKTKITAGKNFKDGTSTFKTATFAAVGTNFIGKDLWFENSAGPEKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFFRDCTITGTIDFIFGNAAVILQNCKIFVRKPMENQKCIVTAQGRLERKEPTGIVLQNCAISSDPGFFPVRHVFKTYLGRPWKQYSRTIIMRPPCLQDLPWPPMEAVFKNHHHAMPN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9656441 9657181 - CmaCh06G015370.1 Cma06g01537 297091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01537 221 PANTHER PECTINESTERASE 14 196 - -
Cma06g01537 221 Gene3D - 11 213 IPR012334 -
Cma06g01537 221 Pfam Pectinesterase 14 196 IPR000070 GO:0030599|GO:0042545
Cma06g01537 221 ProSitePatterns Pectinesterase signature 2. 111 120 IPR033131 -
Cma06g01537 221 PANTHER PECTINESTERASE 14 196 - -
Cma06g01537 221 SUPERFAMILY Pectin lyase-like 14 195 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01537 Cma-Chr6:9656441 Cma06g01521 Cma-Chr6:9604438 4.38E-118 dispersed
Cma06g01533 Cma-Chr6:9645268 Cma06g01537 Cma-Chr6:9656441 5.16E-133 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01537 K01051 - csv:101212686 321.627