Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01540 ATGAATTCTTCTTCGAAACTACCCGTCCTTCTCTGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGTGCTCATTGGACCGAGCACACCCGACCCCTTTTCATCAATTAATCTAGACAGTATTAGACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAATTCAGTAGCACCAAAGACAACACTCAAACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAAGCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCAATCAAATTGCTTTCGCTGGGCCTTGTCGGAACACAGAACCAATTGTCGTTCAAATTGATGCCACGTTAAAAGGTGGCGTTGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACTGGACGAGGTACATTGGATGGACAAGGTAGTGAGGTTTGGAAGTACAATGATTGCCATGTGAATGAAAATTGTCAGAAGCTCCCAGTTAGTTTAAAACTTAATGGCATCCGACACGGACTCGTGAAAGGCCTCACTTCCCTTAACAGTAAAGGGAATCACATGTTCATCACGAATTCTGAAAATATTAGGGTTCGAAAGCTACACCTGATCGCACCAGATGATAGTCCGAACACTGATGGTATACATCTTAGTCGCTCCACTAAGGTGAGAATTACAAAATCTACCATTGCTACGGGTGACGACTGTATCTCTGTCGGTAGAGGATCGATGAACGTTGTTATCGACCAAATCAAATGCGGGCCAGGACATGGTATCAGTATTGGTAGCCTCGGGAAGTACCCAAATGAGGAGGACGTGCGGGGTATTATCGTTAGGAACTGCACGTTAACTAACACTGACAATGGGCTTAGAATCAAAACATGGGCAGACTCGCCCCCGAGTGCAGCGGTAGGCATACTATTCCAAGACATCAATTTGATCAATGTGAAGAACCCGATTATCATCGACCAACAGTACAGCTGCTCAAAAGTTTGCAAAAAGCCGCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTTAATATAAAAGGAACAACAATCTCTCCAGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATATGAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGTTAAGAATTCATTAGAATATAAATGGCCAATTATCGCCATTTTCTTGGTGAGGAGAATCTCAAAATTCTCAAAAACCATGAAGCTTTCATCTCTGGTAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCTGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGGCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGATGCATGTGCTTACAGAGGAAGCTCCACCTTTTTAATACCAGAGGGCAGCTTCTTCCTTGCCCAAGTGTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCAGCTCACCATCACCGGCAACATCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTGTATGGTTTCAACTGCCGCCATCGCTTGAGTTGTGGCATTTTCACCACATCTTTGAAGCTGAGTGATGTGTCAAATGCGACAGTGAGCAATATTAGCCTTGTGAACAGCAAGGGCTTTCATGTAGCCCTTAATGGGTGTGACAATATTCATCTTTCTGGGTTCAAGATTACAGCTCCTTGGAATAGTCAGAACACTGATGGCATTCATATCAGTCAGTCCACCAATATCAACATCACAGCCTCCGACATCAGTGTTGGCGACGACTGTGTTTCCATCGGACCTGGTAGCATCAACGTGTCGGTTTCTAACGTTATATGTGGTCCTGGTCATGGAATCAGTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGAAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAGTATTGTCCTAACCATTTTTGTGACATAAAAGAGTCATCAGGTGTGAAGCTGAGTAACATCAATATTAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAA 2613 45.04 MNSSSKLPVLLWLFLASFVAAEAKVLIGPSTPDPFSSINLDSIRHRKEVVFNVLSFGAKFSSTKDNTQTFMKTWVAACRSKQAARVVIPSGVFLINQIAFAGPCRNTEPIVVQIDATLKGGVDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSEVWKYNDCHVNENCQKLPVSLKLNGIRHGLVKGLTSLNSKGNHMFITNSENIRVRKLHLIAPDDSPNTDGIHLSRSTKVRITKSTIATGDDCISVGRGSMNVVIDQIKCGPGHGISIGSLGKYPNEEDVRGIIVRNCTLTNTDNGLRIKTWADSPPSAAVGILFQDINLINVKNPIIIDQQYSCSKVCKKPPSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNMKYSGRPNDKALPFRSDCTNAKVGYRVKNSLEYKWPIIAIFLVRRISKFSKTMKLSSLVIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPGGDPWRGLAVFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTFLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWIYFKSLRQLTITGNIGSGILDGQGAETWLYGFNCRHRLSCGIFTTSLKLSDVSNATVSNISLVNSKGFHVALNGCDNIHLSGFKITAPWNSQNTDGIHISQSTNINITASDISVGDDCVSIGPGSINVSVSNVICGPGHGISVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGEDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYINLTAIEPPETDDIGRFNCKGSLNNFSILNSTF 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9660334 9665322 + CmaCh06G015400.1 Cma06g01540 297094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01540 870 ProSitePatterns Polygalacturonase active site. 709 722 IPR000743 GO:0004650|GO:0005975
Cma06g01540 870 Pfam Glycosyl hydrolases family 28 526 842 IPR000743 GO:0004650|GO:0005975
Cma06g01540 870 Pfam Glycosyl hydrolases family 28 78 409 IPR000743 GO:0004650|GO:0005975
Cma06g01540 870 PANTHER - 37 413 - -
Cma06g01540 870 SUPERFAMILY Pectin lyase-like 496 844 IPR011050 -
Cma06g01540 870 PANTHER EXOPOLYGALACTURONASE-LIKE 488 859 - -
Cma06g01540 870 PANTHER - 488 859 - -
Cma06g01540 870 Gene3D - 495 861 IPR012334 -
Cma06g01540 870 Gene3D - 39 438 IPR012334 -
Cma06g01540 870 SUPERFAMILY Pectin lyase-like 47 412 IPR011050 -
Cma06g01540 870 PANTHER EXOPOLYGALACTURONASE-LIKE 37 413 - -
Cma06g01540 870 SMART pbh1 797 824 IPR006626 -
Cma06g01540 870 SMART pbh1 379 417 IPR006626 -
Cma06g01540 870 SMART pbh1 702 722 IPR006626 -
Cma06g01540 870 SMART pbh1 652 678 IPR006626 -
Cma06g01540 870 SMART pbh1 346 368 IPR006626 -
Cma06g01540 870 SMART pbh1 203 229 IPR006626 -
Cma06g01540 870 SMART pbh1 313 334 IPR006626 -
Cma06g01540 870 SMART pbh1 763 784 IPR006626 -
Cma06g01540 870 SMART pbh1 732 753 IPR006626 -
Cma06g01540 870 SMART pbh1 230 251 IPR006626 -
Cma06g01540 870 SMART pbh1 629 649 IPR006626 -
Cma06g01540 870 SMART pbh1 679 700 IPR006626 -
Cma06g01540 870 SMART pbh1 283 304 IPR006626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01540 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - csv:101212922 640.188
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01540 Cma14g01608 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01540 Cma-Chr6:9660334 Cma17g01071 Cma-Chr17:7640231 1.87E-85 dispersed
Cma14g01608 Cma-Chr14:12084155 Cma06g01540 Cma-Chr6:9660334 2.63E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013780 0 1 0 0 0 1 2 1 1 1 0 1 1 1 0 2 1 0 1 1 0 1 1 1 1 1 2 0 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01540 Cma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0