Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01542 ATGAATTCTAATTTCGGAAAGGATTTCGAGTTCGATTTGGGAATCGGATCTTCCCGCTCCAAATCCCTCAACGATCAGAAAAATAAAACCACTTCGTATTCTTCCTACGCTTCCTCTGGTTCTTCGAATTCGTCGACACAGACGAGGCCGGCCTGGAAGCCTAACAATCCGTCGTGGACGCATCAGCCGGCGCCGAATCAGGCGGCGCGACCTAACTTGTCCAATTCGCCCGCTTCCATGGTCGGTGATATATTTGGGAAGAGCTGGGGTTCGACTGCTAATTCAGGCTCCAATTCGGGCATTGGAATTGTTGAAAAGAATCCGAATCTGTTCGGCGATTTGGTCGGTTCGGCCTTGGGATCGGGTAAGAGTAACACAAATGCTTCATTGAAGAATTTGGCTTCGAATCCGGCATCATCGAGTGCCGCTTTGAATAGGAATTCGTTTTCCATGGGAAATATGAGCAATTCGTTGCCAAAAGCCAGTGGTAATCCGGCTAAAAGCAGTGCAAATGGGAGTTTTGAGAATCTCAACAGTTACAATAGTGGGCGAAGTAATGAGAGCTATACCACCAATATCAGGGCTCCAAATCACAGAGGTCCAAGCATGAGCTCAACCATTGGGAGTGGTAAGACGAGCTCTAGTAAGGATCCCTTTGGTTCTTTAGTTGACTTCGGATCTAAGCCATCAGGGAATCTGAATTCAACGAGTAAGAGCCAAAAGATCAACACAAACGAGGACTCATTTGGGGATTTCCAGAATGCTTCAAATCCAAGCACTACAGCGTTTCCTTCGAGCGGATCGAGTGGGAGTGGCATTGGGTTCAATGGATCGAGTTTTCATTCAGACTTAAACATGGGTGATTTTGGAATGCCCTCAATGGATTTTGGCTCCAAAGCTCAAGAGACTGTTCAAACCGCTGCCAGTGATCCACTTGATATGTTGTTTAGCTCATCCAAAGCCTCAGCTGGAGGTGCTCCAATGGCACCCGAAGCAGCTGGAGCACCGCAATCCTTTGATGCCGATGGCTGGGGATTCGATTCGGAGTTTGGGGGAGGCAGTCATGATGTGGGTGGTTCAACGACTGAGATTGAAGGACTTCCTCCTCCTCCTGCAGGGGTGACAGCTTCTTTGGCAAAGAACAAGGGAGTTGATGTCTACAAGCAGGGACAATACGCCGATGCTATTAAGTGGCTTTCTTGGGCTGTGATTCTTTTCAAGAAAGCTGGTGATAATGCTGCCACAGTCGAAGTCTTGTCGACACGAGCTTCATGTTACAAAGAAGTTGGGGAGTATAAGAAGGCCGTGGTTGATTGTACAAAGGTATTGGATCACGACGATACAAATGTAACCGTTCTCGTTCAACGTGCACTTCTGTATGAAAGTATGGAGAAGTATAAACTTGGAGCTGAAGATCTGAGGGCTGTCCTGAAGATCGATCCGGGTAACAGAGTTGCGAGAAGCACGGTTCACCGCTTGACTAAGTTGGCAAGCTAA 1497 47.63 MNSNFGKDFEFDLGIGSSRSKSLNDQKNKTTSYSSYASSGSSNSSTQTRPAWKPNNPSWTHQPAPNQAARPNLSNSPASMVGDIFGKSWGSTANSGSNSGIGIVEKNPNLFGDLVGSALGSGKSNTNASLKNLASNPASSSAALNRNSFSMGNMSNSLPKASGNPAKSSANGSFENLNSYNSGRSNESYTTNIRAPNHRGPSMSSTIGSGKTSSSKDPFGSLVDFGSKPSGNLNSTSKSQKINTNEDSFGDFQNASNPSTTAFPSSGSSGSGIGFNGSSFHSDLNMGDFGMPSMDFGSKAQETVQTAASDPLDMLFSSSKASAGGAPMAPEAAGAPQSFDADGWGFDSEFGGGSHDVGGSTTEIEGLPPPPAGVTASLAKNKGVDVYKQGQYADAIKWLSWAVILFKKAGDNAATVEVLSTRASCYKEVGEYKKAVVDCTKVLDHDDTNVTVLVQRALLYESMEKYKLGAEDLRAVLKIDPGNRVARSTVHRLTKLAS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9668527 9671108 + CmaCh06G015420.1 Cma06g01542 297096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01542 498 MobiDBLite consensus disorder prediction 130 269 - -
Cma06g01542 498 MobiDBLite consensus disorder prediction 227 269 - -
Cma06g01542 498 Gene3D Tetratricopeptide repeat domain 374 498 IPR011990 GO:0005515
Cma06g01542 498 MobiDBLite consensus disorder prediction 130 220 - -
Cma06g01542 498 MobiDBLite consensus disorder prediction 319 340 - -
Cma06g01542 498 PANTHER OS03G0340700 PROTEIN 7 497 - -
Cma06g01542 498 SMART tpr_5 416 449 IPR019734 GO:0005515
Cma06g01542 498 SMART tpr_5 376 409 IPR019734 GO:0005515
Cma06g01542 498 SMART tpr_5 450 483 IPR019734 GO:0005515
Cma06g01542 498 MobiDBLite consensus disorder prediction 17 79 - -
Cma06g01542 498 MobiDBLite consensus disorder prediction 1 79 - -
Cma06g01542 498 SUPERFAMILY TPR-like 378 488 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01542 - - - bhj:120088121 766.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01542 Cma14g01607 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01542 Cma-Chr6:9668527 Cma10g00330 Cma-Chr10:1515717 3.78E-12 dispersed
Cma14g01607 Cma-Chr14:12075253 Cma06g01542 Cma-Chr6:9668527 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g147 . . . . . . . . . . Cma06g01542 Cma14g01607 . Car14g01426 . Cpe08g00170 Cpe03g01349 . . . . . . . . . . . . . . . . Cone7ag0129 Cone4ag0134 . . . . . . . Bda13g00198 . . Bma02g00918 . . . Cmo14g01643 . . . . . . . . . . . . . . . . . . . . . Csa03g01491 Chy06g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008564 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01542 Cma_Chr06 FPKM 24.210838 26.032574 21.110624 18.642866 13.604649 12.861393 13.570493 33.48513 33.494816 35.053547