Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01546 ATGATTCCCGAGCTCGAGAAACCGAAGATTCTTGAGATAAAGGTCCGAATGGACTGTAATGGGTGTGTTCAGAAGATCAAGAAGGCGTTGTATGGAATCAATGGCATTTACGATATCTACATAGACTTTCCCCAACAGAAGTTGACAATCATTGGATGGGCTGATCCAGACAGAATCATGAAAGCCATTAAGAAAACCAGGAAGATAGCCACCATTTGTTCCGAGTATGAACAGGCAGATCCACAAGCTTCTACTCAACTCCCTGATAATCCACTGCCTTCTGGTGGCGAAGCGGAAGCTCCTACTCCGTCGCATGATGTGGCGATGGTCGATGGGCTACCTGGACATTCACACGCTGAGGTAGCACCTGGCCAGACGACCGTCCACGAAGCTCATTCGGGCCAACAGTTTGATTTGACCAATGCTACCAACCAACAAGCAACACAGCCTCTTGGCTCACATGAGGTCGGACAGGTTCATGTTACTCACAACCAGCCATCACAACACGGCCATGTCGTCCATCAAAGTTCCTTGGAACCCGGTGATGTCCACCACCTAGGACCAGAGTCTGGCCATGTCGTCTCACATCAACCTGAGAATAGCCATGTGGCTCATCAACTACCAGAACATGGCCATGTAGGCCATCAACAGTCACCCATCAACGGGTACGTGGTTCACCAACATCAACCTGAGCATAGCCATGTAGTAAGCCATCATCAACCACCTGATCACGGCCACGTAATCCACCAACAGCCACCCGAGCATAGCCACAGCCACCCAACTGAACACAGCCATGACCATGTAGTCCAACACCACCAATCCGAACAAGGCCATGGACGCACCTCAAGCCACAACTACCACCACAATATCCCACGAACAATTCACGGGTCGACATCGACACATCCAATGACAGTGATACACAGCTACAACACATACCAGCCATCACCATACGTAACAGAGTACATCCGTCCATTGACAACCCACAGGCCCTCCCCATATGCCTATGAATACATACCACAGCAGTCATCCTCCACCCATTATAGCCCGAGAATGGACCGTTACAATGACGACTATAACAACACAGGCATAAGCAACAACAACAATGGGAACATCACATCAATATTCAGCGACGAGAATCCGAACGCTTGTAATCTAATGTAA 1161 49.18 MIPELEKPKILEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRKIATICSEYEQADPQASTQLPDNPLPSGGEAEAPTPSHDVAMVDGLPGHSHAEVAPGQTTVHEAHSGQQFDLTNATNQQATQPLGSHEVGQVHVTHNQPSQHGHVVHQSSLEPGDVHHLGPESGHVVSHQPENSHVAHQLPEHGHVGHQQSPINGYVVHQHQPEHSHVVSHHQPPDHGHVIHQQPPEHSHSHPTEHSHDHVVQHHQSEQGHGRTSSHNYHHNIPRTIHGSTSTHPMTVIHSYNTYQPSPYVTEYIRPLTTHRPSPYAYEYIPQQSSSTHYSPRMDRYNDDYNNTGISNNNNGNITSIFSDENPNACNLM 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9688535 9690178 - CmaCh06G015460.1 Cma06g01546 297100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01546 386 MobiDBLite consensus disorder prediction 234 302 - -
Cma06g01546 386 MobiDBLite consensus disorder prediction 77 91 - -
Cma06g01546 386 CDD HMA 12 71 IPR006121 GO:0046872
Cma06g01546 386 ProSiteProfiles Heavy-metal-associated domain profile. 17 72 IPR006121 GO:0046872
Cma06g01546 386 MobiDBLite consensus disorder prediction 283 302 - -
Cma06g01546 386 MobiDBLite consensus disorder prediction 234 282 - -
Cma06g01546 386 MobiDBLite consensus disorder prediction 166 201 - -
Cma06g01546 386 Gene3D - 8 72 - -
Cma06g01546 386 PANTHER OJ1116_C07.8 PROTEIN 1 385 - -
Cma06g01546 386 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 385 IPR045181 GO:0046872
Cma06g01546 386 MobiDBLite consensus disorder prediction 77 120 - -
Cma06g01546 386 Pfam Heavy-metal-associated domain 14 66 IPR006121 GO:0046872
Cma06g01546 386 SUPERFAMILY HMA, heavy metal-associated domain 10 68 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01546 - - - cmax:111470859 741.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01546 Cma14g01615 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01546 Cma-Chr6:9688535 Cma19g01026 Cma-Chr19:8775739 3.27E-13 dispersed
Cma14g01603 Cma-Chr14:12056932 Cma06g01546 Cma-Chr6:9688535 2.99E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g130 . . . . . Bpe14g01110 . . . . Cma06g01546 Cma14g01615 Car06g01312 Car14g01434 . Cpe08g00178 Cpe03g01356 Bhi01g01055 Tan10g1044 . . . . . . . . . . . . . . Cone7ag0125 . . . . . Blo02g00490 Blo07g00162 Bda11g00515 Bda13g00204 . Bpe13g00679 . Bma06g01485 . . Cmo14g01652 . . . . . . . . . . . . . Cla05g00677 Cam05g0744 Cec05g0750 Cco05g0750 Clacu05g0736 Cmu05g0701 Cre05g0775 . Csa03g01495 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005312 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01546 Cma_Chr06 FPKM 5.688962 4.277528 13.106176 13.172997 2.927022 3.900377 2.747612 0.494583 0.4644 0.278737