Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01548 ATGTCTACGGCGAGTTCGAGCTCTGTAAGGAAACCTAGTGAATCTGTTCCTCTCCAGTTTCCGGCCGGCCTTCGTGTTCTTGTTGTTGATGATGATCCTACCTGCCTTATGATCTTGGAGAAGATGCTTCGGATTTGTCGCTACGAAGTAACGAAATGTAGTCGAGCTGAGGATGCGTTATCGGTCCTCAGACGTTACAAGAACGGGTTCGATATCGTTTTGAGCGATGTTCATATGCCAGACATGGATGGATTCAAGCTTCTGGAATGCATTGGACTTGAAATGGACTTGCCTGTGATTATGATGTCGGTGGACGACGGAAAAAACGTTGTTATGAAGGGAGTGACTCATGGTGCTTGTGACTACTTAATAAAACCTGTTCGAATTGAAGCGTTGAAGAACATATGGCAGCACGTTGTTCGTAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGTGTTGAGGATGTCGATCGACAGCAAAAGGCGAATGAAGAAGCAGATTATTCATCTTCTGCTAATGAAGGAAGCTGGAGGAACTCGAAGAGGAGGAAGGAGGACATAGACGATGCTGAGGAGAGGGATGACTCATCGACCCTAAAAAAACCGAGGGTTGTTTGGTCCGTTGAGCTTCATCAACAGTTCGTGGGCGCTGTTAATCAGCTAGGAATCGAGAAGGCTGTTCCAAAGAAGATTCTCGAATTGATGAATGTTCCTGGACTCACTAGAGAAAACGTTGCCAGCCATCTTCAGAAATATCGCCTCTACCTGAGAAGAGTAAGTGGAATGACACTGCAACAAAGTAATTTGAACAACACATTCATGAGTGCCCAAGAAGCATTTGGCTCGACGTTGAACGGGCTTGATCTTCAAACGCTCGCTGCTGCTGGTCAACTCCAGCCACAGAGCCTTGCTACGCTCCAAGCAGCGGGATTTGGTCGGTCTACAGCGAAATCAGGCATGCCTATGCCTCTTGTTGACCAAAGGAACCACTTTTTTAGCTTCGAAAATCCGAAGTTGAGATTCAGTGATGGACAACAGCCACATTTGAATGGAAGTAAACCAATGAATCTTCTTCATGGAATTCCGACAACGATGGAGCCGAAACAGCTAGCTAATCTTCAGCAACACTCTGCACAATCTCATGGAAACATGACAATGCAAGCTAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTGATGCAGACACCTCAACCACAAGCTCGATCACAGATCCTAAATGAATGTACAGCAACGAGCGTTACAAGGCTTCCACCGACAATACAGCAGTCGATTTTGCCGAATGGAACCGCCGGTTCGGTTTTGGCTAGGAATGAATTTACGACTAACAGCAGAGGTGGAGGCTACAATCTAATTTCACCAGCCTCAACAATGTCAAATTTTCCCATGAACCAAACTGCAGAATTACCTGGTAACAGTTTTCCACTTCAAAGTACACCAGGGGTGTCGAGTATTGTACCAAAGGGAAGATTCCCGGACGAGGTTAACTCGATCTCAGATATTAAAGGATCTGAGGGTTTCGTGCCAAGCTATGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACACGTAGGTGTGACCTTCGATGCATCGCAAGGTAGTCTTGACATTCCGACCGCAGCATTTGGTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACATAACAGGCACACATCTACGGTAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCCCAAAGTATGGGTCAACAACTCAATCCTCTTTTCGATGATGGCTCGGTGAGAGTTAAAATGGAACGAGCTTCGGAAACTAGCAGTCAAACCGACCTTTTTTCTGAACACTTTGGTCAGGAGGAGGACCTAATGAGTGCACTTCTTAAACAGCAGCAGGGAAGCATTGCAACAGCTGAAAATTCTTTCGACCGCTTCCACAGAGAGACGAACTCGAGTCTGGTTGTGGAATTGGGCGCTACGTCGGTGCTCTTGGCTCATGGAATTGAGATTTTTGATGCAATTGCCAGGTTTAAGGACCCCTTATGA 2079 46.42 MSTASSSSVRKPSESVPLQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSVLRRYKNGFDIVLSDVHMPDMDGFKLLECIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKANEEADYSSSANEGSWRNSKRRKEDIDDAEERDDSSTLKKPRVVWSVELHQQFVGAVNQLGIEKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGMTLQQSNLNNTFMSAQEAFGSTLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHFFSFENPKLRFSDGQQPHLNGSKPMNLLHGIPTTMEPKQLANLQQHSAQSHGNMTMQASAQGGQTSSQLMQTPQPQARSQILNECTATSVTRLPPTIQQSILPNGTAGSVLARNEFTTNSRGGGYNLISPASTMSNFPMNQTAELPGNSFPLQSTPGVSSIVPKGRFPDEVNSISDIKGSEGFVPSYDMFRDLHPQKPDWDLQHVGVTFDASQGSLDIPTAAFGHQGYASSQQNGHNRHTSTVGKAMFLLEEGSDNGNAQSMGQQLNPLFDDGSVRVKMERASETSSQTDLFSEHFGQEEDLMSALLKQQQGSIATAENSFDRFHRETNSSLVVELGATSVLLAHGIEIFDAIARFKDPL 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9701157 9704338 + CmaCh06G015480.1 Cma06g01548 297102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01548 692 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Cma06g01548 692 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cma06g01548 692 Gene3D - 200 262 - -
Cma06g01548 692 MobiDBLite consensus disorder prediction 179 200 - -
Cma06g01548 692 Gene3D - 24 161 - -
Cma06g01548 692 SMART REC_2 24 136 IPR001789 GO:0000160
Cma06g01548 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 632 IPR045279 GO:0009736
Cma06g01548 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 632 - -
Cma06g01548 692 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Cma06g01548 692 PIRSF RR_ARR_type-B 4 654 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cma06g01548 692 MobiDBLite consensus disorder prediction 151 200 - -
Cma06g01548 692 CDD REC_typeB_ARR-like 26 140 - -
Cma06g01548 692 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cma06g01548 692 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Cma06g01548 692 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cma06g01548 692 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Cma06g01548 692 MobiDBLite consensus disorder prediction 151 166 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01548 Cma08g01254 CCT
Cma06g01548 Cma17g00351 CCT
Cma06g01548 Cma08g01254 ECH
Cma06g01548 Cma17g00351 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01650 Cma-Chr1:11291445 Cma06g01548 Cma-Chr6:9701157 1.02E-100 dispersed
Cma06g01548 Cma-Chr6:9701157 Cma14g01602 Cma-Chr14:12043159 0 dispersed
Cma08g00447 Cma-Chr8:2518826 Cma06g01548 Cma-Chr6:9701157 5.58E-14 dispersed
Cma08g00448 Cma-Chr8:2523266 Cma06g01548 Cma-Chr6:9701157 6.27E-14 dispersed
Cma08g00932 Cma-Chr8:5812117 Cma06g01548 Cma-Chr6:9701157 1.81E-41 dispersed
Cma14g00494 Cma-Chr14:2422084 Cma06g01548 Cma-Chr6:9701157 4.53E-24 dispersed
Cma18g01221 Cma-Chr18:9624146 Cma06g01548 Cma-Chr6:9701157 1.63E-39 dispersed
Cma17g00351 Cma-Chr17:1926092 Cma06g01548 Cma-Chr6:9701157 0 wgd
Cma06g01548 Cma-Chr6:9701157 Cma08g01254 Cma-Chr8:7655266 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35283 PF00072 Response_reg 1.10E-21 CL0304 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01548 - K14491 csv:101209013 1137.09