Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01550 ATGGCGTCCAACTTCTGGGTCACCGCCACCGCCGATCTGCTCCTCCTCCTGATCTTCACGGTCATACCCTTTTCGATTTGTCAGCCAACTGACCAAGCTCCGCCTCCCTCCGCCGATTCTTGCAATAGTATCTTCTTGTCCTATAGTTTCAACCAAGGAACGAAGCTCCCCCCTAATGTCACTGATCGGACCCGTCAGCCGTACCGATTTGAGTCCACTCTCTTGATTCTAAATAACGGCCTTGAGGAGCTTAAGTCTTGGAAGGTTTTTGTGGGGTTTCAGCACGATGAGTTCTTGGTCTCGGCTTCCGGCGCCGTCCTTGCCGATGGGAATAGCGTTCCCGGAAACGTCGGCAATGGGACCGTCTTTGCTGGTTTTCCGATGACCGATTTGAAGACGGCGATTGAAACTGCTGGAGACTTCACTCAGATGCAGGTCCAAGTCAAATTGGTTGGGACCCAATTTGGGGTTGCCCCTCCGAATAGTCCGATGCCTACGAATATTTCTCTTGCCAATGATGGATACCTCTGCCCTCGGCCAACTCTACTAGGAAAGAGTGAGATGCACGTCTGTTGTAGACCCGATCCAAGTGTTAAAACGAACATCACAACTAGTGAAGAGTTCTTGCCTCGCCAAAATGGCGATCTAACGATCATTGAAGAGTTCTTGCCTCGCCAAAATGGCGATCTAACGATCATGTATGATGTGACAAGAACCTATGATTCAAGTTATTGGGCACAAGTCAAAATTTCTAACCATAATCCTCTTGGTCGTCTTGATTATTGGAAGTTGAGCTGGGAATGGATGAAGGATGAGTTCATCTATTCAATGAAAGGTGCTTATCCTTCTGTTGTTGATTCTACTGATTGCATTTTTGGTAGACAAGGCACTTATTATAAGGATTTAGACTTTGCCAATGTATTAAGCTGTGAAAAAAAGCCAACAATTGTTGATTTGCCTCCAACTAAGGCCAACGACACTACGCTCGGGTTGATCCCGTTCTGTTGTCGAAATGGGACGATCTTGCCTTCTCATATGGACTCAAGCAAGTCGATTTCAGCGTTTCAAATGCAAGTTTTTAAAATGCCACCAGATCTCAATAGATCTCAGATTACACCACCTCAGAATTGGAAGATCAGTGGCGTTCTAAACCCGACGTATAAATGTGGTGCTCCATTGAGGGTAAGTCCTAGCGAATTCCCAGACTCAAGTGGTTTACCATTGAATTCGACTGCAGTGGCTAGTTGGCAGCTTACTACAACGATTCTGTCGTCCCGTGTAGAACGTGTGCTTGTGAAATGCTGTGTTTCATTTTCAGCTTACTACAACGATTCTGTCGTCCCGTGTAGAACGTGTGCTTGTGGATGCCCGCATAATGCTGCTCGTACATGTAATGCAACGTCCTCTGCAATGCTCCTCCCACCGGAAGCCCTTCTTGTTCCGTTTGAGAATAGGACCGCCATGGCTGTGGCTTGGGCTGGTCTTAAACACTACCCAATTCCCAATCCCATGCCTTGTCCTGATAACTGTGGTGTGAGTATCAATTGGCATTTGTATACCGATTATAGAGACGGATGGAGTGCAAGGATTACTCTCTTCAACTGGGACGAAGTGAACTTTGCAGATTGGTTTGCTGCAGTTCAGATGAAGAAAGCAGCACCTGGTTTCCAGGCAATGTACTCGTTCAACGCGACGACCTTGGAACTGGATGGTGCCAATAATACTATCTTTATGCAGGGTAATCCTGGACTAAACTATCTCGTAGGCGAAACGGACGGAGTCCACCCAGAAAGGGATCCGAGGGTACCCGGAAAACAGCAATCTGTGATATCATTTACAAAGAAGAACATACAAGTTCTTAACATGGCTGCTGGAGATGGGTTCCCCACTAAAGTGTTCTTCAATGGGGAAGAATGTCTACTTCCAAAAACATTCCCTGTTAACGACAGCCGAAGGAACTTAGCTTCGTTAATTCCGAGCATCCTAATGCTACTATTCATTCCCTGTTAA 2010 46.47 MASNFWVTATADLLLLLIFTVIPFSICQPTDQAPPPSADSCNSIFLSYSFNQGTKLPPNVTDRTRQPYRFESTLLILNNGLEELKSWKVFVGFQHDEFLVSASGAVLADGNSVPGNVGNGTVFAGFPMTDLKTAIETAGDFTQMQVQVKLVGTQFGVAPPNSPMPTNISLANDGYLCPRPTLLGKSEMHVCCRPDPSVKTNITTSEEFLPRQNGDLTIIEEFLPRQNGDLTIMYDVTRTYDSSYWAQVKISNHNPLGRLDYWKLSWEWMKDEFIYSMKGAYPSVVDSTDCIFGRQGTYYKDLDFANVLSCEKKPTIVDLPPTKANDTTLGLIPFCCRNGTILPSHMDSSKSISAFQMQVFKMPPDLNRSQITPPQNWKISGVLNPTYKCGAPLRVSPSEFPDSSGLPLNSTAVASWQLTTTILSSRVERVLVKCCVSFSAYYNDSVVPCRTCACGCPHNAARTCNATSSAMLLPPEALLVPFENRTAMAVAWAGLKHYPIPNPMPCPDNCGVSINWHLYTDYRDGWSARITLFNWDEVNFADWFAAVQMKKAAPGFQAMYSFNATTLELDGANNTIFMQGNPGLNYLVGETDGVHPERDPRVPGKQQSVISFTKKNIQVLNMAAGDGFPTKVFFNGEECLLPKTFPVNDSRRNLASLIPSILMLLFIPC 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9706162 9709406 - CmaCh06G015500.1 Cma06g01550 297104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01550 669 PANTHER COBRA-LIKE PROTEIN 7 218 665 - -
Cma06g01550 669 Pfam COBRA-like protein 244 421 IPR006918 GO:0010215|GO:0031225
Cma06g01550 669 PANTHER COBRA-LIKE PROTEIN 7 12 219 - -
Cma06g01550 669 PANTHER COBRA-LIKE PROTEIN 7 12 219 - -
Cma06g01550 669 PANTHER COBRA-LIKE PROTEIN 7 218 665 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01550 Cma14g01601 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00942 Cma-Chr4:4844817 Cma06g01550 Cma-Chr6:9706162 0 dispersed
Cma06g01550 Cma-Chr6:9706162 Cma16g00850 Cma-Chr16:5020925 0 dispersed
Cma14g01601 Cma-Chr14:12039793 Cma06g01550 Cma-Chr6:9706162 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01550 - - csv:101209258 1164.06