Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01556 ATGGGTTTTGTATCGATCCCTCTCCCCGTCCAAGTATTTTCTTCTCTTTCAGTTTCCTCTCATCTCTCCTCCTGCTCTGAACCGAATTTCCCCTTTCCCCATTCAATTCCCTCCAATTTGATACTCCGACCCAGTCTTTTACAAATGGGCGGGCTGGATAGGTCACAGACCAGCTCCAATTCCATGCAGCGTGTTAAGGTTTACCGGTTGAATGATGATGGCAAGTGGGATGACCAAGGAACAGGCCATGTCACTGTGGACTATATGGAGAGATCAGAGGAGTTGGGGTTGTTTGTCATTGATGAAGAAGACAACGAGACTTTACTTCTACATCGTATCAGCTCAGATGATATCTATCGGAAGCAAGAAGATACTATTATTTCGTGGAGAGATCCAGAATATTCAACAGAGCTAGCACTTAGTTTTCAAGAGGCTACAGGATGCTCTTTCATTTGGGATAATATCAGTAGCGTTCAAAGGAATCTCCAGTTTAGTACTCTTAGCAATGAGACATTTCATAGTGTGACTAGTGAGCTAAGGGAGCTTCCTACTGTCGAGCTATCTACACTTCCGCTAATACTTAAGACTGTGGTTGAGAGTGGAATTGCAGATCAAATGAGGTTGACAGAACTCTTATTGAATGATCGAGATTTTTTCAGAAAGCTGATGAACCTTTTCCGAATCTGTGAAGATTTGGAAAATTCCGATGGTCTTCACATGATATTTAAAATAGTTAGAGGAATTGTTTTACTCAACAGTCCGCAAATCTTCGAGAAAATATTCCACGACGATCTTATTATGGATATTATCGGTTCTCTTGAGTACGATCCCGAGGTTCCACATACTCAGCAATTTCGTAATTTCTTGAAAGAGCATGTTGTATTTAAGGAGGCTATTCCCATTAAGAGCCCCGCAGTTCTGTCAAAAATACATCAGACATATAGAGTTGGTTATTTAAAGGATGTTGTTTTGGCACGAATGTTGGATGACTCCATGGTTGCTAATCTGAATTCCATAATTCATGCCAACAATGTGCTTGTTGTTTCTTCTTTGAAGGACGACAGTACCTTTATTCAGGAATTGTTTGTTAGGTTGAGATCACCCTCCACACCTGACGACTCAAAAAAGGACTTGGTTTATTTTCTGCGCGAGTTTTGTAGCGTAAGCAAAAGCCTCCAAATGGCAATGCAGCTTCGGTTGTTCAGGGACCTTATGAATGAAGGTATCTTTGACATCATTACGGATGTCTTACAGAGTCCAGACAAAAAGCTTGTCTTAACAGGGACAGATATCCTCATTCTTTTCTTGAATCAGGATCCAAATCTTTTGCGTACTCATGTTGCTCGACAGGAAGGATTTCCACTGTTTGGACTTCTGATTAAAGGTATGGTAACAGATTTTGGGGACAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATCTATTGGATACCTATGCATCTGGAGTCCAGAGAGATACAATTGTTGAGATTTTCTATGAGAAGCATTTGGGCCAATTAATAGACATCATAACAGCATCATGTCCTACAGAAGGTTTGCAATCAGGCAAGAACATTGAAGACGCCGATGGAAGACTGGGAGATACGAATGGCATGAAGCCTGAGATTCTGTCGAATATATGCGAATTACTTTGCTTTTGTGTGCTTCAACACCCTTATAGAATAAAGTCTAATTTTCTCCAAAATAATATGATAGATAAAGTGGTGTTGTTAACACAACGGAAGGAAAAGTACTTGGTTGTTGCTGCAGTTCGATTTATTCGTACTGTTCTTTCACGCCATGATGAACATCTGATAAATTATTTCGTCAAGAATAACACTCTCAAACCTATCATAGATGTATTTGTTGCTAATGGAAGTCGGTATAATCTGCTAAATTCTGCTGTTTTAGAACTTCTCGAGTATATAAAGAAGGAAAATTTGAAGTTATTGGTTATACATATAATTGATTCCTTCTGGAATCAGTTGTCCCGATTTGAAAATTTGTCTTCCATTCAAGCTTTAAAAGTTAAATATGATCAGTGCCTTGAAAATTGTGAAATGAAAGGCATTTTGAACACATCAGATCCTCGAAAAAGAAATGACGAGCGTGCTCCTGAGAAAGAAGAGGACGACTATTTCAATGGGGACAGTGATGAAGAGGATACTGCATCTGCATCTGTTTCTCGAAAACAGAACGAACAATCTCAACCTGGTTTATCCAATGGTGTTGCTACAAATTGCCCACCAGTAAGTCTTAGGTCAGGTGGTCTAGTTGATTACGAGGACGATGAAGACGATGAAGACTACAGACCACCCCAGAGAAAACAACCCGACACTTCAGACAAAGACATTGAAATAATGGAAGTCCTCTGGCATAAGCGGAAGTTGGCTCCTCAAGAGGAACCTGAGATAGTTAAGAAGCAACGACTGGTTAGGAAGCACAAGCCAAAAGATGGTGTACTTGCTTCCTTGTGTACCACACTGAGTCAGGCCGTCTTACCTGGTAAGAAGACAACAAACGCTTCCGAAACAAGTTCGTGCATGCCTTATGAGAACAAAAGCTCAGTCGAAGAGTGTCATGAGACAAATCCTGCTATTCCTAGCAGTTCTGATGGCAGTAGCAGCAATTCTGATGAGGAAAATCGCAGGGAAAACAAATCTACAGCTTCTAAAGGTTACTCCAACAGTAGTGTCTTGCATGTTACTTCAGAAAACCAACAATTGGGCGGGGACGACTATCCATTGATACCAACAAAATCATCGCCCGAAATGACTGTGAACGGATCGATAAGTTAG 2799 40.62 MGFVSIPLPVQVFSSLSVSSHLSSCSEPNFPFPHSIPSNLILRPSLLQMGGLDRSQTSSNSMQRVKVYRLNDDGKWDDQGTGHVTVDYMERSEELGLFVIDEEDNETLLLHRISSDDIYRKQEDTIISWRDPEYSTELALSFQEATGCSFIWDNISSVQRNLQFSTLSNETFHSVTSELRELPTVELSTLPLILKTVVESGIADQMRLTELLLNDRDFFRKLMNLFRICEDLENSDGLHMIFKIVRGIVLLNSPQIFEKIFHDDLIMDIIGSLEYDPEVPHTQQFRNFLKEHVVFKEAIPIKSPAVLSKIHQTYRVGYLKDVVLARMLDDSMVANLNSIIHANNVLVVSSLKDDSTFIQELFVRLRSPSTPDDSKKDLVYFLREFCSVSKSLQMAMQLRLFRDLMNEGIFDIITDVLQSPDKKLVLTGTDILILFLNQDPNLLRTHVARQEGFPLFGLLIKGMVTDFGDNMHCQFLEILRNLLDTYASGVQRDTIVEIFYEKHLGQLIDIITASCPTEGLQSGKNIEDADGRLGDTNGMKPEILSNICELLCFCVLQHPYRIKSNFLQNNMIDKVVLLTQRKEKYLVVAAVRFIRTVLSRHDEHLINYFVKNNTLKPIIDVFVANGSRYNLLNSAVLELLEYIKKENLKLLVIHIIDSFWNQLSRFENLSSIQALKVKYDQCLENCEMKGILNTSDPRKRNDERAPEKEEDDYFNGDSDEEDTASASVSRKQNEQSQPGLSNGVATNCPPVSLRSGGLVDYEDDEDDEDYRPPQRKQPDTSDKDIEIMEVLWHKRKLAPQEEPEIVKKQRLVRKHKPKDGVLASLCTTLSQAVLPGKKTTNASETSSCMPYENKSSVEECHETNPAIPSSSDGSSSNSDEENRRENKSTASKGYSNSSVLHVTSENQQLGGDDYPLIPTKSSPEMTVNGSIS 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9732900 9748120 + CmaCh06G015560.1 Cma06g01556 297110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01556 932 PANTHER ATP SYNTHASE GAMMA-RELATED 50 847 - -
Cma06g01556 932 Pfam Phosphatase 4 regulatory subunit 3 216 404 IPR006887 -
Cma06g01556 932 MobiDBLite consensus disorder prediction 835 853 - -
Cma06g01556 932 MobiDBLite consensus disorder prediction 860 876 - -
Cma06g01556 932 Gene3D - 58 176 IPR011993 -
Cma06g01556 932 MobiDBLite consensus disorder prediction 835 932 - -
Cma06g01556 932 MobiDBLite consensus disorder prediction 728 749 - -
Cma06g01556 932 MobiDBLite consensus disorder prediction 693 785 - -
Cma06g01556 932 PANTHER BINDING PROTEIN-RELATED 50 847 - -
Cma06g01556 932 Gene3D - 357 661 IPR011989 -
Cma06g01556 932 MobiDBLite consensus disorder prediction 769 785 - -
Cma06g01556 932 SUPERFAMILY ARM repeat 222 645 IPR016024 -
Cma06g01556 932 MobiDBLite consensus disorder prediction 889 910 - -
Cma06g01556 932 SUPERFAMILY PH domain-like 63 158 - -
Cma06g01556 932 MobiDBLite consensus disorder prediction 693 711 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01556 K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3 - csv:101210978 1465.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01556 Cma17g00363 CCT
Cma06g01556 Cma08g01270 CCT
Cma06g01556 Cma14g01597 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01597 Cma-Chr14:11985587 Cma06g01556 Cma-Chr6:9732900 0 wgd
Cma17g00363 Cma-Chr17:2011733 Cma06g01556 Cma-Chr6:9732900 0 wgd
Cma06g01556 Cma-Chr6:9732900 Cma08g01270 Cma-Chr8:7720648 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g88 Blo01g00051 . . Bda08g00314 . Bpe14g01103 . Bma05g01015 Cmo08g01239 Cmo17g00353 Cma06g01556 Cma14g01597 Car06g01321 Car14g01409 . Cpe08g00157 Cpe03g01335 Bhi01g01080 . . Lac11g0927 . . Lcy11g1349 Cla06g00434 Cam06g0461 Cec06g0467 Cco06g0466 Clacu06g0448 Cmu06g0449 Cre06g1225 . . Cone7ag0106 Cone4ag0109 Lsi05g01584 Csa06g01744 Chy11g01562 Cme06g00778 Blo02g00481 . . Bda13g00212 Bpe05g00814 . Bma02g00925 . . Cmo06g01555 Cmo14g01627 Cma08g01270 Cma17g00363 Car08g01140 Car17g00336 Cpe12g00315 Cpe17g00061 Bhi12g01920 . . . . . Lcy12g0798 Cla05g00694 Cam05g0761 Cec05g0769 Cco05g0765 Clacu05g0752 Cmu05g0717 Cre05g0792 Lsi09g01483 Csa03g01510 Chy06g00746 Cme11g02073
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001634 1 6 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 4 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01556 Cma_Chr06 FPKM 11.06427 11.577916 14.513129 14.253844 14.541335 12.729327 15.176027 21.069788 20.788233 20.586494
Cma06g01556 Cma_Chr00 FPKM 8.877962 8.29788 9.516894 9.046145 8.516763 7.018732 9.779432 13.180352 11.919515 12.232777