Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01557 ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGTTCAAATCAAATATCGTTCTGCTTCTGGATGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCATGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACGCTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGTCACAGGTGGAGAGATTGA 375 46.13 MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQFKSNIVLLLDEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9748776 9751419 + CmaCh06G015570.1 Cma06g01557 297111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01557 124 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Cma06g01557 124 Pfam RNA polymerases M/15 Kd subunit 4 34 IPR001529 GO:0006351
Cma06g01557 124 SUPERFAMILY Zinc beta-ribbon 62 124 - -
Cma06g01557 124 ProSiteProfiles Zinc finger TFIIS-type profile. 82 123 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cma06g01557 124 Gene3D - 57 124 - -
Cma06g01557 124 SMART rpol9cneu 5 68 IPR001529 GO:0006351
Cma06g01557 124 CDD Zn-ribbon_RPB9 74 123 IPR034012 GO:0006379
Cma06g01557 124 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 124 - -
Cma06g01557 124 Gene3D - 1 56 - -
Cma06g01557 124 Pfam Transcription factor S-II (TFIIS) 85 123 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cma06g01557 124 PIRSF RNApol_RpoM 4 124 IPR012164 GO:0006351
Cma06g01557 124 SMART Cys4_2 84 124 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cma06g01557 124 PANTHER DNA-DIRECTED RNA POLYMERASE 1 124 IPR012164 GO:0006351
Cma06g01557 124 SUPERFAMILY Zinc beta-ribbon 1 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01557 K03017 RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9 - csv:101211228 244.202
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01557 Cma14g01595 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01595 Cma-Chr14:11980443 Cma06g01557 Cma-Chr6:9748776 2.44E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g85 . . . . . . . . . . Cma06g01557 Cma14g01595 Car06g01322 . Sed02g1140 Cpe08g00156 . Bhi01g01081 Tan10g1067 Cmetu06g1826 . Hepe05g1391 . Lcy11g1347 . . . . . . . Cone14ag0724 Cone15ag0734 . . Lsi05g01585 . . Cme06g00780 . Blo07g00154 Bda11g00508 . . Bpe13g00690 . Bma06g01474 . . . . . . . . . . . . . . . . Cla05g00696 Cam05g0763 Cec05g0771 Cco05g0766 Clacu05g0754 Cmu05g0719 Cre05g0794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011015 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 0 1 2 1 1 0 1 2 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01557 Cma_Chr06 FPKM 11.542408 12.7633 11.752258 10.284427 13.855603 17.983494 13.637419 17.966389 18.314098 18.579996