Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01559 CATAGTCTTGTAATCTCAGAAGTTGAAGATGCAGTTGTTCATCGTGGAGTATTTGATGGGGATTTTCTGCTGACTCCATTGAAGGTCCGCGGATGGCGAATTGCCATTCAAATATATTATCCTGAAAAACCAACATTAGCCTTAGAATCAACAGAAAGATGTTCGACAGAAGCCTTAAATTCTAAACATAGTCTTGTAATCTCAGAAGTTGAAGATGCAGTTGTTCATCGTGGAGTATTTGATGGGGATTTGCTGCTGACTCCATTGAAGCCGTGTTATACTATTGCTGCATTAGTATCTGTTCTTCTTTCTTCAAGAGCTTTGGATTGGCTTGGATCATTTGGGAGGGAACTGGAGGACATGGCTCGGGAGGGGCAGTTTTTCTTAACTCACTCAAGTTCTATGACTAATATGGCTCTTCGAAAGTTTGTTTATGGTGATACACCTTCCATTAACTTGAAACGTTCAAGTCTCCCCATTAAGGCGCATAAAACATCGGAGCCTGATGTAGAAATTGACCTTAGAGAAGTTTATTTTCTTATCATGCACTTTCTTTCATCTGGGCCATGTCATAGAACTTGTGGGCTGCTCTGGGATGAGCTTTTTGAACATCAGCTTTTACCCCGACGATATCATGCTTGGTTTTCTAGAAATGGGATGCAAAGTGGGCATGAAAATGACGATGGCTCGTCATTTCCTTTAAAGTACCAGCACTTGGTGGAGAGGTATTCACATGTCGATAAGGACCACCTGATAAAACTTTTGAAGCAATTGATGCTTAGCAAGGCCTCTCCATCTGGAGGTATGAATGGTGCAATTGCTCCAAATGCAGCTGACGTGCCTACATTATTAGGAACGGGCACATTTTCACTTCTGAGCTATGATAAAAATGAGGGAGCTAGCAAGCCAAGTGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCACCTTCTGTACGTGCAGCATGTTATGCAATTGCTAAGCCATCAACAATGGTGCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATCGGAATGCTGTCTATTGTGCAATTTTTGATCGCATGGGAAGATATGTGATAACTGGATCAGATGATCGCCTTGTAAAGATTTGGTCAATGGATACTGCATATTGCTTGGCAAGCTGCCGAGGACATGAGGGTGATATCACTGATCTGGCTGTAAGTTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTTGGCGCTTGCCTGATGGGCTACCAATTTCAGTCTTGCGAGGACATACTGGTGCTGTTACTGCCATTGCCTTCAGTCCCAGAGCTGCATATCAGCTTCTTTCGATTTCTCTTTTTTGTGTAGATCGTCAGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAGAGTGCTCCTGTGTAGATCGTCAGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAGAGTGCTCCTCGGATTTATGTTCCAAGACCTTTGGACTCTGTGACTGCTGCAGCAAGAAACAGCGTCTCTTCCGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCATTTAATGCTTGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTTTAGCCAGGGTATGGAGTGCCTATAAAGGAAATAATGATAACCCTGACCAACCAAATCATGAGATTGATGTGTTGGCTGGCCATGAGAATGATGTCAACTATGTGCAATTCAGTGGATGTGCAGTAGCGTCAAGATTTACAACAACTGACATTGCGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTCACTTACGACAATATAGTTACTTGTTCTCGTGATGGCAGTGCAATTATTTGGGTTCCAAGATCACGTAGGTCACATGGGAAGGTTGGCCGCTGGACCCGTGCATACCATTTAAAAGTGCCACCTCCACCCATGCCTCCACAGCCTGCTCGAGGCGGTCCTCGTCAGAGGATTCTTCCTACTCCTCGTGGTGTAAATATGATAATTTGGAGTCTAGACAATCGTTTTGTCTTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGAAGCTTAGTGCACTCTTTGACTGGTCATACTGAATCTACGTATGTACTCGATGTTCATCCTTCTAATCCAAGGATTGCTATGAGTGCTGGATATGATGGGAAAACAATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTCGATGGCAAGTTTTCATCAGATGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAAGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTCGGTGACTATCGCCCACTTATTCAGGATCCTTCTGGCAATGTCGTCGACCAGGTAGGAGAATACTATACGAAACTCAACTCACTACTTACAGGCGGAATTTGCAAGATCTCCTTTCTGACTCAGGTTTGTCTCTTACTACTCCAACTGATATTGGTATATGTTTTCATGCAAGATCTCCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGGCGTTTGGGTGCCATGGGTCTGGAATGGCGTCTATCCAGAACCTTATCAGACTGCATACCAGCAAAGGCGTTTGGGTGCCATGGGTCTGGAATGGCGTCCATCTTCTCTAAAAATTTCTGTTGGGCCCGACTTCAATCTCGACCCAGATTACCAATTATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGACGATACCGATTCAGAATATAATGTCCCTGAAGATTATTCTACTGGTGGGGAGCAAAGAACAAAGCGACGATACCGATTCAGAATATAATGTCCCTGAAGATTATTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCGAACTGCTCAACTGATCCAGAATGCAGCTCTGAAGACACAGGGATCGACGATGCCCCTGCTGATGGTCTTCGAAGATCAAATAGGAAAAAACAGAAAGCAGACATGGAGGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGGAATATGGACGAGTATGAAGGTGATATAGTTAGGAGTTCCAGAAGCCAGAAGTCGAAATCTGGCCATAAGCCTTCCAAAAAGAAATCAGCATCTAAGTTGTTAAGACCTCAAAGAGCTGCTGCACGTAATGCCCGTAATTGGATATCATCATTTAAGGGAAAATCTACAGATGGAGAAGATGAATACAACTCGGGAGGTGATTGCTCAGAAAGTGAATCTACGTTAGAAGATTCAGACATCGAGAGCGATGAATACAAAAGGTCATTGCAAAACAGAAATAAGCATTCAAAAGGGAAAGAAGTATTTGTAGATGGAATCGAGGAGACAAAATCTCTTGATGTTCCTGAATCTCGTGTGGATGTTGGAAACCGAAAGAAGTTGATTCTTAAATTCTCCCTTCGGAATCGTTCCTGA 3603 43.08 HSLVISEVEDAVVHRGVFDGDFLLTPLKVRGWRIAIQIYYPEKPTLALESTERCSTEALNSKHSLVISEVEDAVVHRGVFDGDLLLTPLKPCYTIAALVSVLLSSRALDWLGSFGRELEDMAREGQFFLTHSSSMTNMALRKFVYGDTPSINLKRSSLPIKAHKTSEPDVEIDLREVYFLIMHFLSSGPCHRTCGLLWDELFEHQLLPRRYHAWFSRNGMQSGHENDDGSSFPLKYQHLVERYSHVDKDHLIKLLKQLMLSKASPSGGMNGAIAPNAADVPTLLGTGTFSLLSYDKNEGASKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMDTAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSISLFCVDRQMMEHVGYGMLGALLRVLLCRSSDDGTCRIWDARSSSQSAPRIYVPRPLDSVTAAARNSVSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSAYKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIAKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPSNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQVGEYYTKLNSLLTGGICKISFLTQVCLLLLQLILVYVFMQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRLSRTLSDCIPAKAFGCHGSGMASIFSKNFCWARLQSRPRLPIMQWIGDQKMKYKATIPIQNIMSLKIILLVGSKEQSDDTDSEYNVPEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSNRKKQKADMEVMTSSGRRVKRRNMDEYEGDIVRSSRSQKSKSGHKPSKKKSASKLLRPQRAAARNARNWISSFKGKSTDGEDEYNSGGDCSESESTLEDSDIESDEYKRSLQNRNKHSKGKEVFVDGIEETKSLDVPESRVDVGNRKKLILKFSLRNRS 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9754232 9767555 - CmaCh06G015590.1 Cma06g01559 297113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01559 1200 MobiDBLite consensus disorder prediction 1079 1096 - -
Cma06g01559 1200 SMART WD40_4 399 438 IPR001680 GO:0005515
Cma06g01559 1200 SMART WD40_4 685 723 IPR001680 GO:0005515
Cma06g01559 1200 SMART WD40_4 441 510 IPR001680 GO:0005515
Cma06g01559 1200 SMART WD40_4 587 652 IPR001680 GO:0005515
Cma06g01559 1200 SMART WD40_4 726 766 IPR001680 GO:0005515
Cma06g01559 1200 SMART WD40_4 537 575 IPR001680 GO:0005515
Cma06g01559 1200 SMART WD40_4 357 396 IPR001680 GO:0005515
Cma06g01559 1200 ProSitePatterns Trp-Asp (WD) repeats signature. 753 767 IPR019775 -
Cma06g01559 1200 MobiDBLite consensus disorder prediction 991 1178 - -
Cma06g01559 1200 CDD WD40 360 766 - -
Cma06g01559 1200 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 497 844 - -
Cma06g01559 1200 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 991 1198 - -
Cma06g01559 1200 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 881 920 - -
Cma06g01559 1200 SUPERFAMILY WD40 repeat-like 355 809 IPR036322 GO:0005515
Cma06g01559 1200 Gene3D - 688 822 IPR015943 GO:0005515
Cma06g01559 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 733 775 IPR001680 GO:0005515
Cma06g01559 1200 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 364 399 - -
Cma06g01559 1200 MobiDBLite consensus disorder prediction 1032 1078 - -
Cma06g01559 1200 MobiDBLite consensus disorder prediction 1000 1024 - -
Cma06g01559 1200 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 158 472 - -
Cma06g01559 1200 PANTHER WD REPEAT DOMAIN 9 158 472 - -
Cma06g01559 1200 Gene3D - 334 547 IPR015943 GO:0005515
Cma06g01559 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 447 IPR001680 GO:0005515
Cma06g01559 1200 MobiDBLite consensus disorder prediction 1143 1178 - -
Cma06g01559 1200 Pfam WD domain, G-beta repeat 402 437 IPR001680 GO:0005515
Cma06g01559 1200 Pfam WD domain, G-beta repeat 547 575 IPR001680 GO:0005515
Cma06g01559 1200 Pfam WD domain, G-beta repeat 444 510 IPR001680 GO:0005515
Cma06g01559 1200 Pfam WD domain, G-beta repeat 359 396 IPR001680 GO:0005515
Cma06g01559 1200 Pfam WD domain, G-beta repeat 727 766 IPR001680 GO:0005515
Cma06g01559 1200 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 405 IPR001680 GO:0005515
Cma06g01559 1200 Gene3D - 548 678 IPR015943 GO:0005515
Cma06g01559 1200 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 439 - -
Cma06g01559 1200 PANTHER WD REPEAT DOMAIN 9 497 844 - -
Cma06g01559 1200 PANTHER WD REPEAT DOMAIN 9 991 1198 - -
Cma06g01559 1200 PANTHER WD REPEAT DOMAIN 9 881 920 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01559 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 1632.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01559 Cma14g01594 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01559 Cma-Chr6:9754232 Cma14g00989 Cma-Chr14:5185502 3.66E-07 dispersed
Cma06g01559 Cma-Chr6:9754232 Cma14g01594 Cma-Chr14:11963318 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01559 Cma_Chr06 FPKM 2.794621 3.983888 2.18603 2.74454 3.687553 3.801221 3.941637 2.729313 2.432705 2.259787