Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01561 ATGTCTTCTTCTCGGGATCGATATTTCAAATCGTACGAGGCCGGTGGAAAGTCGGCCATGGAGTTGAACGATCGCCGGCGGCTTCAGGAAGAAGAAGATGATGATCCGTTTCTTAAATTTATCGATTACGCGAGGTCTGTGCTAGCATTTGAGGACGAAGAAGACTTCGATCCTAATGTTAAAGGAACGAAGACCTATACGCCGGGTTGGAGTTGGATCGCCTCTCGGGTCCTCAGAACTTGTATCGCCTACTCCAGTTCTGTTACCCCTGCGATTTTGCTATCCGAGCTCTCGCAGGCCTGGTCTGAGCAACACAGAATTGGGGCTCCCAAGAAAATACCTGAATGTATTAATCAGTTGAAGAAGAAGAATAGAAGAAAGAAGCTCCCGAAAACAGTTACTATTGACTCCATATATGAGAAGAATTTCCTATCTTTAAGCAGCGTTTTGGAAGCAGTTATTGTTGAAGAATTTATTCTTCCAGGTACAAATATACACATGCTTACTTTGGGGGATTTTTGGAGCTCTAATACGATTGATCTCTATCTCCATTGTAGATTCTATGACTTAGTGGGTGGAATTTTGAAAAAAGGGAGGCAAATATTTTTAACTGGATGCTATCTTCGTGCTGCCAGTGGCGGATCTGGTCATCCACGACTTCTACCAACTGAATACCTTATCATATTGTTAGATGAGGAAGAGGATGATGATGTAATACTTCTAGGAGCTCAATTTTGTTCCGATTCCTTTTCTTCTGTTTCTCTTGATGCCGTCGATAAAGGGACTACATATTCATTATATGCAAGGATTGAGTCTATTGGTCCAAAAGAAATTCATGAGAAAACTAACGGCTTACAGATGATACAAATTCTTCTTCTTGATAATGATGGTTTCAAGCTAAAGTTTCTCTTATGGGGTGAACAGGTGATACTAGCCAATCTTTTAAGTGTTGGTAGCTTGCTTGCCCTTGATAGACCATATATTGCTACTGTAAACGAGAATGGCATTGGATCAAGTGATGAGCTTTGTCTTGAATATGGTAGTGCAACACAGTTATATTTGGTGCCTTGCATTCAGCACGAGGAGCAAGTATGTGTTTTAACACAGAATATAAACCAAGCTTCAAGGACGCTTGGTACATCATATCCTACTCAGGATCCCCGTGTTTCTCAAGTTTCCTTGCCGTGCGATTCACATGGGACAATTGATTTTGGTAATTATCCTTTTCGGTCTTTTGTGGTCGACCTTCAAGACAAGATGACTGGCATTAGCTTATATGGGATCGTTATAGATATAGTAAATGAAAGAAATACCACAGAAGCTGTTTTCTCTATGAGAATTGAAGATAACACTGGACAAATTTCGGCAAAGTTGCACTTCGTGAGATCTTGGTCGCTGGGAAGGGTAGGCGTTGGACATACAGTATATATCAGTGGCCTGACATGCACCATAAAGAAGAATAACTTGGAGGCTTTATGGATTGAGAATCATGTTGGAGCTTCGTTTGTCAACCTTAGCTGCTTGCCAGCATTGTTAACCTCATCTTGTCTTCATAAAATTTCACGACTTTCTGATCTTACCAGCAACTCTCATGGTACAAAGGTCTGTCGAGCTCGGCTTGACCAAGTTTCACATTGTCATGTCAAACTGCTGCAGCTGAAAATCACCCTTGCAGATGATACTGCAAAAATCTTTGCTTGGTGTACAGGTCAAACTGCTGCAGAGTTGTTGCAAATATCTCCTGATGAATTCTGTGAACTACCGGAGGAAGAACAAGTAATGTATCCATCATCACTCGAGAACGAAAGTTTTGTGGTTGCAATAGTGAATTGCAGGAGGCAAACTAGCAAATGTGGAAATAATGTCTATTCTAATAAGCTCTCCCAACATTCATTCTCATTCACAGTTCCACGGAAAGTAAGAGAACACCAGAAAATGGACGGTGAACGGAGAGTCGGAGTGGCGGTGGATTTCTCCTCCTGCAGCAGAAAAGCTCTCAAATGGGCTATCGATAACATTATCCGCAAGGGCGATTTTTTGATTCTCATCACTGTTCGTCCTGACGGTGATTATGAAGACGGCGAGATGCAGCTCTGGCGAACCACCGGATCTCCGCTTATTCCTATGGTTGAGTTTGCCGATCCTCACACCTTGAAGAAGTACGGGATTAAGCCTGATGCTGAAACTATTGACATTGTGACGACTGCGGCGGCGCAGAAGGAGATCACTGTGTTGCTTAAGATTTATTGGGGAGATGCTCGTGAGAAGATTTGTGAAGCGATTGATCATATTCCTATTAGCTGTCTTGTGATCGGAAACAGAGGTCTTGGCAAGATTAAGAGGTTAGAGCGAATTCTCTTTTTGTTGTTTAAATCAGCTTTTGGTTGA 2388 42.13 MSSSRDRYFKSYEAGGKSAMELNDRRRLQEEEDDDPFLKFIDYARSVLAFEDEEDFDPNVKGTKTYTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQAWSEQHRIGAPKKIPECINQLKKKNRRKKLPKTVTIDSIYEKNFLSLSSVLEAVIVEEFILPGTNIHMLTLGDFWSSNTIDLYLHCRFYDLVGGILKKGRQIFLTGCYLRAASGGSGHPRLLPTEYLIILLDEEEDDDVILLGAQFCSDSFSSVSLDAVDKGTTYSLYARIESIGPKEIHEKTNGLQMIQILLLDNDGFKLKFLLWGEQVILANLLSVGSLLALDRPYIATVNENGIGSSDELCLEYGSATQLYLVPCIQHEEQVCVLTQNINQASRTLGTSYPTQDPRVSQVSLPCDSHGTIDFGNYPFRSFVVDLQDKMTGISLYGIVIDIVNERNTTEAVFSMRIEDNTGQISAKLHFVRSWSLGRVGVGHTVYISGLTCTIKKNNLEALWIENHVGASFVNLSCLPALLTSSCLHKISRLSDLTSNSHGTKVCRARLDQVSHCHVKLLQLKITLADDTAKIFAWCTGQTAAELLQISPDEFCELPEEEQVMYPSSLENESFVVAIVNCRRQTSKCGNNVYSNKLSQHSFSFTVPRKVREHQKMDGERRVGVAVDFSSCSRKALKWAIDNIIRKGDFLILITVRPDGDYEDGEMQLWRTTGSPLIPMVEFADPHTLKKYGIKPDAETIDIVTTAAAQKEITVLLKIYWGDAREKICEAIDHIPISCLVIGNRGLGKIKRLERILFLLFKSAFG 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9772657 9784384 - CmaCh06G015610.1 Cma06g01561 297115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01561 795 CDD USP_Like 651 782 - -
Cma06g01561 795 Pfam Cell division control protein 24, OB domain 2 169 296 IPR035200 -
Cma06g01561 795 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 650 782 - -
Cma06g01561 795 PANTHER NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY 551 615 - -
Cma06g01561 795 PANTHER NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY 36 550 - -
Cma06g01561 795 Pfam Cell division control protein 24, OB domain 3 415 599 IPR035203 -
Cma06g01561 795 Pfam Universal stress protein family 650 782 IPR006016 -
Cma06g01561 795 SUPERFAMILY Nucleic acid-binding proteins 550 618 IPR012340 -
Cma06g01561 795 Pfam Cell division control protein 24, OB domain 1 37 164 IPR035201 -
Cma06g01561 795 Gene3D HUPs 646 788 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01561 - - - cmax:111470879 1202.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01561 Cma-Chr6:9772657 Cma14g00104 Cma-Chr14:455403 3.92E-42 dispersed
Cma14g01591 Cma-Chr14:11950117 Cma06g01561 Cma-Chr6:9772657 6.35E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g74 . . . . . . . . . . Cma06g01561 . Car06g01326 . Sed02g1138 Cpe08g00152 . Bhi01g01086 Tan10g1073 Cmetu06g0331 . Hepe05g1386 . Lcy11g1341 . . . . . . . . . . . Lsi05g01590 . . Cme06g00786 . Blo07g00148 Bda11g00503 . . . . Bma06g01469 . Cmo06g01558 . . . . . . . . . . . . . . Cla05g00703 Cam05g0769 Cec05g0778 Cco05g0771 Clacu05g0759 Cmu05g0725 Cre05g0799 . Csa03g01515 Chy06g00752 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010983 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01561 Cma_Chr06 FPKM 76.528641 74.731865 47.989395 46.288414 25.079195 22.548803 25.124043 30.855766 32.918682 34.673809