Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01562 ATGCAAGTCTTCTCTTCATCTCCTTCAACCGCAAGCTTCAATCTGTTCTCTTCATCTCAAAATCCGAACAATCTCTCGAAATACAGATGCAAAAATTTGATTATACCTCTCCATTTCGCTCCGAGCTCCTTCTCCGTTTGCTGTTCTTCGAGGGAGTCCTCGACGGCGGTTCTCTCCTCCGATATTACGTTGGACGGCGAGAAAAGAGAGGCGTCGGAGGAGGTTCTTAGAGTTCGGCGGCCGGTAATGGAGTTTACCGGTGAAGATTCCGGCGACGGCGAGGAGGCGGAAGATGAGAGGAGTTCTTCGGTGATAGAACTAGGGCTAGCAGAGATTGCGAAGAAGATGCCGATATTTGAACCGGAGAATCGGGTGGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAAAGCGAAGATGATGGCGAGGAATTTTCTGTATGATGAAGCACGGCAAGTCCTTCAGAAGTGTATAGATAAATGGCCGGAGGATGGGCGGGCATACGTAGCATTGGGGAAGATGTTGAGCAAGCAAATGAAAGCCGCCGACGCCAGAAATGTGTATGAGAGAGGCTGCCAAGCCACCCAAGGCGAGAACTCCTACATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAATATCAGGAAAGCAAGAGAGCTCTTTGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCCGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAGGGGAACCTCAAGAAGGCCAGGAATCTACTAGCCAAAGGCCTCAAATACTGTGGTGGGAATGAGCGTGGGAATGAGTATATCTATCAAACACTCGCCCTGCTCGAAGCCAAATCGAATCGCTACGAGCAGGCACGTTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAAAGCTGTGCTAGTTGGCTTGCATGGGCGCAGCTGGAGATGCAGCGGGAGAACAACCTTCTTGCTAGACAACTATTTGAGAAAGCCATCCAGGCGAGCCCCAAGAACAGATTTGCGTGGCACATATGGGGACTCTTTGAAGCTAATATAGGAAATATCGAGAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTAAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCCTCTGCAAGCATGGCTCGAGTTTTGTTTAGGAGAGCATCTGAACTGGACCCCAAGCACCAACCAGTGTGGATTGCTTGGGGATGGATGGAATGGAAAGAAGGTAACATAGGGAAGGCAAGGGAGCTGTATCAAAGAGCATTGTTAATTGACTCAGCTAGTGAGAGTGCAGCTCGATGCCTTCAGGCTTGGGGTGTTCTAGAACAGAGAGCAGGCAACCTATCAGCAGCTAGAAGATTATATAGATCCTCTCTAAGCATAAACTCTCAGAGTTATGTAACATGGATGACCTGGGCAGCACTGGAAGATGATCAAGGGAACGCAATCCGAGCGGAGGAAATTCGAAATCTATACTTCCAGCAGAGAACAGAAGTTGTGGATGATGCTTCGTGGGTTATGGGGATCTTAGACGTTATTGACCCAGCACTTGATAGCATAAAGAGGCTGTTGAAGCTGGAGCAAGACCCCTTCGCCATGTCAAGAGTAGCAGATGGAGGCGCTAGAAACAGCTCTTTAGACGACTCGGGTGCCTCCTCTAGTGTGGCTGACAGTGAAACTGGGTTTGATTTGGATGCCTTTATGATGAAAAAGTTGTCGATAGACACGTCGAAACTCGAAATTCAACTCGAAACAACTCGACCCAAAAGATTTAAGTATCAAAGAAGTCAAATGAGATCAGAAAACAGACCAGAAATGGCTGTTTCACAGAGCCAAAGAACAGCATCTTCATCTACTTGA 1920 47.97 MQVFSSSPSTASFNLFSSSQNPNNLSKYRCKNLIIPLHFAPSSFSVCCSSRESSTAVLSSDITLDGEKREASEEVLRVRRPVMEFTGEDSGDGEEAEDERSSSVIELGLAEIAKKMPIFEPENRVDSSALERPLIINLDLALYKAKMMARNFLYDEARQVLQKCIDKWPEDGRAYVALGKMLSKQMKAADARNVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNERGNEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQASPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASMARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCLQAWGVLEQRAGNLSAARRLYRSSLSINSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGILDVIDPALDSIKRLLKLEQDPFAMSRVADGGARNSSLDDSGASSSVADSETGFDLDAFMMKKLSIDTSKLEIQLETTRPKRFKYQRSQMRSENRPEMAVSQSQRTASSST 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9785377 9790681 - CmaCh06G015620.1 Cma06g01562 297116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01562 639 MobiDBLite consensus disorder prediction 610 639 - -
Cma06g01562 639 Gene3D Tetratricopeptide repeat domain 94 276 IPR011990 GO:0005515
Cma06g01562 639 SUPERFAMILY TPR-like 110 391 IPR011990 GO:0005515
Cma06g01562 639 ProSiteProfiles TPR repeat profile. 279 312 IPR019734 GO:0005515
Cma06g01562 639 SMART tpr_5 381 414 IPR019734 GO:0005515
Cma06g01562 639 SMART tpr_5 172 205 IPR019734 GO:0005515
Cma06g01562 639 SMART tpr_5 241 274 IPR019734 GO:0005515
Cma06g01562 639 SMART tpr_5 313 346 IPR019734 GO:0005515
Cma06g01562 639 SMART tpr_5 279 312 IPR019734 GO:0005515
Cma06g01562 639 SMART tpr_5 207 240 IPR019734 GO:0005515
Cma06g01562 639 SMART tpr_5 415 448 IPR019734 GO:0005515
Cma06g01562 639 SMART tpr_5 452 485 IPR019734 GO:0005515
Cma06g01562 639 MobiDBLite consensus disorder prediction 620 639 - -
Cma06g01562 639 Gene3D Tetratricopeptide repeat domain 277 514 IPR011990 GO:0005515
Cma06g01562 639 SUPERFAMILY HCP-like 332 504 - -
Cma06g01562 639 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 45 620 IPR044624 GO:0003729|GO:0006397
Cma06g01562 639 Pfam Tetratricopeptide repeat 285 346 - -
Cma06g01562 639 SMART hat_new_1 255 291 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 221 253 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 186 219 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 395 427 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 429 464 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 361 393 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 152 184 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 293 325 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 466 498 IPR003107 GO:0006396
Cma06g01562 639 SMART hat_new_1 327 359 IPR003107 GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01562 - - - csv:101215572 1053.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01562 Cma-Chr6:9785377 Cma13g00272 Cma-Chr13:2241484 2.32E-07 dispersed
Cma06g01562 Cma-Chr6:9785377 Cma12g00801 Cma-Chr12:5789534 2.24E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01562 Cma_Chr06 FPKM 6.084043 6.799 5.843718 5.96899 14.229289 15.965565 16.082111 7.719521 7.372238 7.021208