Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01564 ATGGTTTCGAGTAATCGGGGGACGAATTCGCATCAGCAACAAGCAGAGTCCTCGAACACGAACACGAACACGAGCCATATGCGATCTAATCGTACAGAATCCATCAGCAAAGCCGTAGCGCAGTACACCATCGATGCTCGTCTTCACGCAGTGTTTGAACAGTCAGGTGAGTCCGGTAAATCTTTTGACTACTCACAATCTATCAGAACCTCGACATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGATGATTCAAAGGGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCTATCGATGAGGCAAATTTTCGGGTTATTGCTTATAGTGAAAACACTAGGGAATTGCTTGGTCTTACTCCTCAATCAGTGCCAAATCTTGAAAAGATAGAGATTCTCACAATTGGGACTGATGTACGGAGCTTGTTCACTTCCAATAGTGCAATTTTGCTTGAGAAAGCATTTGGGGCTCGAGAAATCACTTTGTTAAACCCTGTTTGGATTCATTCTAAGAATTCTTTGAAGCCATTTTATGCTATTTTGCATAGGATTGATGTAGGAATTGTGATTGATTTAGAGCCAGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGGGCAGTTCAATCGCAAAAGCTTGCAGTGCGTGCAATTTCTAAGCTACAAGCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATGTTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATACGATCGAGTTATGGTGTATAAGTTTCACGAAGACGAGCACGGTGAGGTTGTGGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCGAGGTTTTTGTTTAAGCAAAACCGTGTTAGAATGATTGTCGATTGCCATGCTTCTCCAGTTCGTGTAATTCAGGCTGCAGGGCTTATGCAACCTCTTTGCTTAGTGGGTTCGACTCTTCGTGCCCCCCATGGCTGTCATTCTCAGTATATGGCCAATATGGGCTCCATTTCGTCGTTAGCAATGGCGGTTGTTATCAATAGTAATGACGATGAAGCTATTGGTGGGAGAAATTCAACGAGGCTTTGGGGTTTGGTTGTTTGCCACCATACTTCGGCTCGGTGTATTCCGTTCCCCCTCCGGTATGCATGTGAGTTTCTAATGCAAGCATTTGGACTTCAACTTAATATGGAATTGCAATTGGCTTCACAGTTGTCTGAGAAACATGTTTTGAGAACTCAAACTCTTTTATGTGACATGCTTCTTCGTGATTCCCCAACTGGCATTATTACTCAGAGTCCAAGCATCATGGACTTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAGTATTACCCTCTAGGCGTGACGCCAACCGAAGCCCAAATAAAGGACGTCGTGGAATGGTTGCTAGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCCGATGCTGGCTATCCAGGGGCAGCCTTGCTTGGTGGTGCAGTTTGTGGAATGGATGTTGCCTATATCACCAAAAGGGATTTTCTCTTCTGGTTCCGATCGCACACAGGAAAAGAGATCAAGTGGGGCGGCGCAAAGCATCACCCAGCGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCTTCGTTCAAGGCATTTTTAGAAGTAGTAAAATCCCGTAGTTTACCGTGGGAGACTGCAGAAATGGATGCTATTCACTCATTGCAGCTTATTCTTCGAGATTCATTCAAGGATAACGCTGCAATCAATTCGAAAGCCGTTGTGCATCCTCAACTTGGGGATCTCAACTTGCAAGGGACCGATGATCTCAGCTTGGTTGCTAGAGAAATGGTCAGGTTGATCGAGACTGCAACTGCTCCAATCTTTGCTGTAGATGTCGACAGCCGTATCAATGGATGGAACGCTAAGATAGCCGAGTTGACTGGGCTTGCAGTCGAGGAAGCTATGGGGAAATCCCTAGTTCGTGATCTCGTGTATAAAGAATCTGAAGAAATAGTCGACAAACTCGTTTCCCGGGCTTTAAAAGGTGAAGAAGAAAAGAATATAGAGATAAAAATGAAGACATTTGGGCGAGATCCAGATGATCAAAGACAGCCAATTTTTGTGGCTGTCAATGCTTGTTCTAGCAGGGACTACACTGATAATATAGTAGGCGTTTGTTTTGTTGGTCAAGATCTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAATGTGATTATAAAGCCATTGTTCATAGTCCCAATCCTCTTATCCCTCCAATATTCGCTTCGGACGACAATACGTGTTGCTCGGAATGGAATACCGCCATGGAAAACCTCACCGGATGGTCCAGAGAAGACATAATTGGAAAAATGCTAGTAGGGGAGGTTTTTGGAGATTGTTGTAGACTGAAGGGGTCAGATGAATTGACCAAATTTATGATTGTCTTGCACGGTGCAATTGGAGGGAAGAACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATTTGTGCAGGCTCTCTTGACAGCAAATAAGAGGATGAATATGGAGGGGCAGATTGTTGGAGCTTTCTGCTTTGTTCAGATTGCCAGTCTTGAATTGCAGCGAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGTAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGCGGTATACGCTTTACTAACTCGCTTCTGGAGGCTACGGATTTGAGTGAAGATCAGAAGCAGTTTCTGGAGACCAGTGTTTCTTGTGAAAAGCAGATGTTAAAGATTATAGAAGATATGGATTTGGAAAGTATTGATGATGGTACAATGGAGATTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGCGATGTTACTACTCAGAGAAAGAAACTTACAACTGGTTCGTGATATACCAGAAGAAGTAAAGACTATGGCCGTATATGGCGATCAAGTGAGAATTCAACAGGTCTTAGCTGATTTCTTGTTGAACATGGTGCGTTACGCACCGTCTCCGGAAGGCTGGGTAGAATTACGTGTCTGTCCATTCCTGAAGCAAAACTCGGATCGACTTTGTCTCGCACACACCGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTGATCCAGGACATGTTTCACAGTGGCGGATGGGCGACTCAAGAAGGATTAGGGTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAAGGGTGAAGTCCAATACATCAGAGAATCTGAAAGATGTTATTTCTTGATCACTCTCGAACTCCCTTTAACAGAGAGAGCCCCCGGCGACGTCAGTTAG 3405 44.23 MVSSNRGTNSHQQQAESSNTNTNTSHMRSNRTESISKAVAQYTIDARLHAVFEQSGESGKSFDYSQSIRTSTSVPEQQITAYLSMIQRGGHIQPFGCMIAIDEANFRVIAYSENTRELLGLTPQSVPNLEKIEILTIGTDVRSLFTSNSAILLEKAFGAREITLLNPVWIHSKNSLKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISKLQALPGGDIKLLCDVVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQAAGLMQPLCLVGSTLRAPHGCHSQYMANMGSISSLAMAVVINSNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDVVEWLLAFHGDSTGLSTDSLADAGYPGAALLGGAVCGMDVAYITKRDFLFWFRSHTGKEIKWGGAKHHPADKDDGQRMHPRSSFKAFLEVVKSRSLPWETAEMDAIHSLQLILRDSFKDNAAINSKAVVHPQLGDLNLQGTDDLSLVAREMVRLIETATAPIFAVDVDSRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEEIVDKLVSRALKGEEEKNIEIKMKTFGRDPDDQRQPIFVAVNACSSRDYTDNIVGVCFVGQDLTCQKVFMDKFISIQCDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMENLTGWSREDIIGKMLVGEVFGDCCRLKGSDELTKFMIVLHGAIGGKNNEKFPFSFYDKKGKFVQALLTANKRMNMEGQIVGAFCFVQIASLELQRTLRMQRQQEKNRFVRMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVSCEKQMLKIIEDMDLESIDDGTMEIEKGEFLLGSVINAVVSQAMLLLRERNLQLVRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVELRVCPFLKQNSDRLCLAHTEFRIVCPGEGLPPELIQDMFHSGGWATQEGLGLSMCRKILKLMKGEVQYIRESERCYFLITLELPLTERAPGDVS 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9793752 9799807 + CmaCh06G015640.1 Cma06g01564 297118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01564 1134 Gene3D - 211 569 IPR029016 -
Cma06g01564 1134 SMART HisKA_10 900 964 IPR003661 GO:0000155|GO:0007165
Cma06g01564 1134 Pfam GAF domain 230 408 IPR003018 GO:0005515
Cma06g01564 1134 ProSiteProfiles PAS repeat profile. 759 811 IPR000014 -
Cma06g01564 1134 CDD HATPase_Phy-like 1011 1123 IPR044767 -
Cma06g01564 1134 PIRSF Phytochrome_conventional 15 1132 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cma06g01564 1134 CDD PAS 634 743 IPR000014 -
Cma06g01564 1134 CDD HisKA 893 956 IPR003661 GO:0000155|GO:0007165
Cma06g01564 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 739 IPR035965 -
Cma06g01564 1134 Pfam PAS fold 626 742 IPR013767 GO:0006355
Cma06g01564 1134 Pfam PAS fold 759 878 IPR013767 GO:0006355
Cma06g01564 1134 SMART pas_2 625 692 IPR000014 -
Cma06g01564 1134 SMART pas_2 758 828 IPR000014 -
Cma06g01564 1134 Gene3D - 413 586 IPR043150 -
Cma06g01564 1134 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 1128 - -
Cma06g01564 1134 PANTHER PHYTOCHROME 8 1128 - -
Cma06g01564 1134 Pfam His Kinase A (phospho-acceptor) domain 905 964 IPR003661 GO:0000155|GO:0007165
Cma06g01564 1134 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 398 IPR016132 -
Cma06g01564 1134 Gene3D - 881 962 - -
Cma06g01564 1134 MobiDBLite consensus disorder prediction 1 32 - -
Cma06g01564 1134 SMART gaf_1 230 418 IPR003018 GO:0005515
Cma06g01564 1134 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 975 1124 IPR036890 -
Cma06g01564 1134 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1012 1124 IPR003594 -
Cma06g01564 1134 Gene3D PAS domain 86 333 - -
Cma06g01564 1134 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 888 956 IPR036097 GO:0000155|GO:0007165
Cma06g01564 1134 Gene3D PAS domain 617 752 - -
Cma06g01564 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 773 877 IPR035965 -
Cma06g01564 1134 SMART HKATPase_4 1012 1127 IPR003594 -
Cma06g01564 1134 Gene3D PAS domain 772 880 - -
Cma06g01564 1134 ProSiteProfiles PAS repeat profile. 623 694 IPR000014 -
Cma06g01564 1134 TIGRFAM sensory_box: PAS domain S-box protein 630 744 IPR000014 -
Cma06g01564 1134 Gene3D - 963 1129 IPR036890 -
Cma06g01564 1134 ProSitePatterns Phytochrome chromophore attachment site signature. 330 339 IPR013516 -
Cma06g01564 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 200 IPR035965 -
Cma06g01564 1134 SUPERFAMILY GAF domain-like 210 405 - -
Cma06g01564 1134 Pfam PAS fold 81 197 IPR013654 GO:0006355
Cma06g01564 1134 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 438 458 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 721 738 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 741 761 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 556 574 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 523 542 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Cma06g01564 1134 CDD PAS 770 878 IPR000014 -
Cma06g01564 1134 Pfam Phytochrome region 421 596 IPR013515 GO:0006355|GO:0009584
Cma06g01564 1134 ProSiteProfiles Histidine kinase domain profile. 907 1127 IPR005467 -
Cma06g01564 1134 SUPERFAMILY GAF domain-like 416 594 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01564 Cma14g01590 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00948 Cma-Chr5:7645389 Cma06g01564 Cma-Chr6:9793752 0 dispersed
Cma06g01564 Cma-Chr6:9793752 Cma18g00452 Cma-Chr18:2495903 0 dispersed
Cma14g01590 Cma-Chr14:11927099 Cma06g01564 Cma-Chr6:9793752 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01564 K12121 - csv:101212197 2071.97