Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g01569 | ATGGCGTCGTCTCTGTTTCTGAATCCTGTGGCGAGTTCTGAGCGATCGCGTGATTCGTCCAGAAAGAAAAAGAAGAAGAAAGCGGCGAGGGAGGACGGTCGTCAAGATCAGAATCACTTGAAGTGGAAATCACAAGCGCAGCATCAAGTTTACTCGTCGAAGCTGTTGCGCGCCTTGAGTCAGGTCAGGATCAGTCCTCCTTATTCCCCATCGGCGCCGAACGAGATGCCACGGCGTGGCCAAGCCGTTCGGGAGGCGGCGGATACGGTTCTGGCGATGACGGCGAAAGGAAGAAGTAGGTGGAGCAGAGCAATCTTGACGAACCGTCTGAAGCTCAAGTTTCGAAAGCACAATCGACAGAAGGCGAGTGTGAGTGGAAGCAGCCGAACGAAGAAGCCGAGAGTTAGCGTTTTGCGGTTGAAAGGGAAGGGATTACCTACTGTACAGAGAAAAGTCCGGCTTCTCGGCCGGCTGGTTCCCGGCTGCCGGAAGCAACCACTGCCGGTGATTCTGGATGAAGCAACTGATTACATACCCGCACTGGAGATGCAGATCCGAGTCATGAGCGCCATATTCAACTTGGTTTCAAGCTCTTCTTCGTCTTCTTCTGGTATGGATTCTTCCATCTCCCAACCTTCTTCTACCTGA | 648 | 53.09 | MASSLFLNPVASSERSRDSSRKKKKKKAAREDGRQDQNHLKWKSQAQHQVYSSKLLRALSQVRISPPYSPSAPNEMPRRGQAVREAADTVLAMTAKGRSRWSRAILTNRLKLKFRKHNRQKASVSGSSRTKKPRVSVLRLKGKGLPTVQRKVRLLGRLVPGCRKQPLPVILDEATDYIPALEMQIRVMSAIFNLVSSSSSSSSGMDSSISQPSST | 215 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9819218 | 9819865 | + | CmaCh06G015690.1 | Cma06g01569 | 297123 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g01569 | 215 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Cma06g01569 | 215 | CDD | bHLH_AtIBH1_like | 137 | 191 | IPR044549 | GO:0006355 | |
| Cma06g01569 | 215 | PANTHER | TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 | 7 | 211 | - | - | |
| Cma06g01569 | 215 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 152 | 196 | IPR036638 | GO:0046983 | |
| Cma06g01569 | 215 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 7 | 211 | IPR044660 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g01569 | Cma-Chr6:9819218 | Cma10g01164 | Cma-Chr10:8345872 | 1.54E-47 | dispersed | |
| Cma14g01583 | Cma-Chr14:11891942 | Cma06g01569 | Cma-Chr6:9819218 | 1.56E-104 | wgd | |
| Cma17g00376 | Cma-Chr17:2094890 | Cma06g01569 | Cma-Chr6:9819218 | 4.99E-82 | wgd | |
| Cma06g01569 | Cma-Chr6:9819218 | Cma08g01285 | Cma-Chr8:7781060 | 1.34E-85 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g01569 | - | - | csv:105434845 | 315.849 |