Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01570 ATGGCTACCGCATCGTTGTCTTCCTCTTCTTCTTCTTCTTCCGGCACCGTTGTCAGTGACAGAAGAGGAATTCCGGCGGCTCAGTTCGTGGAGGACGTTCGTACTTATCTCTCTAATTTAGGCCTCGATGTTCAATCCGCCCTTGCTTTTCTCCAGGAGCGACTTCAGCAATACAAGTTAGTTGAGATGAAACTCCTTGCTCAACAAAGGGACTTGCAGGCAAAGATTCCAGACATAAAGAAGTGTTTGGGTATAGTTGCTACTTTACAAGCAAAGAAGGATGCAGCCACTGGTGAGCCACTTGTAGCAGATTTTGAGATCTCTGAGGGCATATATTCCCGGGCTCGCATTGAGGAAACTGAGTCAGTTTGTTTATGGCTTGGTGCAAATGTCATGCTGGACTATTCATGTGAAGAGGCCACAGCCCTCCTACAGAAGAACCTGGATAATGCTAAAGCGAGCTTAGAAGTTCTTGTTGCTGATCTACAGTTTTTGAGGGACCAGGTGACAATAACACAGGTGACAATAGCTCGTGTTTACAATTGGGATGTTCATCAGCGTCGAGTTCAGCTAGCTGGCACCAGTGTAGAAAGCTCGTAA 600 46.5 MATASLSSSSSSSSGTVVSDRRGIPAAQFVEDVRTYLSNLGLDVQSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIKKCLGIVATLQAKKDAATGEPLVADFEISEGIYSRARIEETESVCLWLGANVMLDYSCEEATALLQKNLDNAKASLEVLVADLQFLRDQVTITQVTIARVYNWDVHQRRVQLAGTSVESS 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9823081 9827983 + CmaCh06G015700.1 Cma06g01570 297124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01570 199 SUPERFAMILY Prefoldin 48 179 - -
Cma06g01570 199 PANTHER PREFOLDIN SUBUNIT 3 9 190 IPR016655 GO:0006457|GO:0016272
Cma06g01570 199 Pfam Prefoldin subunit 58 182 IPR004127 -
Cma06g01570 199 Gene3D - 43 185 IPR009053 -
Cma06g01570 199 Coils Coil 148 168 - -
Cma06g01570 199 PIRSF Prefoldin_3 7 197 IPR016655 GO:0006457|GO:0016272
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01570 - - - cmos:111441741 359.377
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01570 Cma14g01582 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01582 Cma-Chr14:11883541 Cma06g01570 Cma-Chr6:9823081 2.15E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g49 . . . . . Bpe14g01093 . . . . Cma06g01570 Cma14g01582 Car06g01334 Car14g01392 Sed02g1130 Cpe08g00145 Cpe03g01320 Bhi01g01099 Tan10g1086 Cmetu06g0386 . Hepe05g1369 . Lcy11g1330 . . . . . . . . . Cone7ag0094 Cone4ag0099 Lsi05g01412 . . Cme06g00798 Blo02g00474 . . Bda13g00223 . . Bma02g00934 . . Cmo06g01564 Cmo14g01614 . . . . . . . . . . . . . Cla05g00715 Cam05g0782 Cec05g0788 Cco05g0784 Clacu05g0772 Cmu05g0737 Cre05g0811 . Csa03g01528 Chy06g00765 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007221 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01570 Cma_Chr06 FPKM 9.894781 10.630216 8.229512 7.353701 18.969728 15.155109 18.612999 8.679655 8.435866 9.164633