Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01572 ATGGCGAAGCATGAGGACCTTCCGATCCCTGTTTTCTCTTCTCTCGACCCGGTCTATGGCGATGGAACTCAGCTTGAGGAAGCTCGCCTTCGATTTGATAATCTCAAGGCCAAGTTTCTCCAAGTTTTTGGGCATTCTCCCGGTGTCTTTGCTCGTTCTCCAGGGAGAGTGAACTTGATCGGGGAGCACATTGACTATGAAGGATATTCTGTGTTGCCTATGGCGATTCGGCCTGATACGATCGTTGCAATTCGGAAGCACGACGCCGGAGAGGCGGAACATCTTCTGAGAATTGCTAATGTTAATGATAAATACTCGATGTGTACCTATCCTGCTGATCCTCATCAGGAAGTAGATTTGAAGAATCACAAATGGGGACACTATTTCCTTTGCGGGTACAAAGGCTATTACGAATTTGCTAAATCAAAAGGACAAGATGTTGGCAAGCCAGTTGGACTTGACGTTCTTGTTGATGGAACAGTTCCTACAGGATCTGGATTATCAAGCTCTGCTGCATTTGTTTGCTCTGCTACCATTGCTATAATGGCTGCTTTTGGTGACAACTTTCCCAAGAAAGAACTTGCCCAACTTACGTGTGAATGTGAGCGGCACATTGGTACACAATCTGGTGGAATGGATCAGGCAATCTCTGTCATGGCCAAATCTGGGTTTGCAGAGCTGATTGATTTCAATCCTATTCGTGCTACTGATGTGCAACTTCCTGCTGGTGGGACTTTTGTTATAGCTCATTCTCTAGCCGAATCACAGAAAGCAGTAACTGCTGCCACAAATTATAATAACAGAGTTGTGGAATGCCGACTTGCTGCTATTGTTCTAGGCATAAAGCTTGGGATGAAACCACAAGATGCAATAGCACAAGTGAAAACTTTATCTGATGTGGAAGGGCTGTGTATTTCATTTGCTAACGAGCGTAATTCTTCAGATCCTGTGCTTGCAGTCAAGGAACTGTTGAAGGAGGAACCATATACAGCTGAAGATATTGAACAAATCACTGTGGACAATCTGCCTTCCGTTCTAGGCAATTCTCCAACTTCATTGGATGTTCTAAAAGCTGCTAAGCATTTCAAGTTGTATCAGCGAGCGTCGCACGTGTACTCTGAAGCCAAACGGGTCTATGCTTTCAAGGATGCAGTTTCGTCAAGTGTAAGTGAGGAAGAGAGGCTTAAGAAACTTGGTGATCTTATGAATGATAGCCACTACAGCTGTAGCGTTCTTTATGAATGCAGCTGTCCCGAATTGGAGGAACTTGTAAAGATATGTCGGGACAACGGTGCTCTCGGGGCGAGGCTGACTGGAGCAGGATGGGGAGGCTGTGCAGTCGCCCTTGTAAAAGAGGCCATTGTTCCCCAATTCATTCTCAGTCTGAAGGATAAGTTCTACAAATCGAGGATTGACAGAGGGATCATTGACAAGAACAAAGTCGATCACTACGTCTTTGCTTCCAAGCCCTCGAGCGGAGCTGCCATCTTCCATTTTTAA 1500 45.4 MAKHEDLPIPVFSSLDPVYGDGTQLEEARLRFDNLKAKFLQVFGHSPGVFARSPGRVNLIGEHIDYEGYSVLPMAIRPDTIVAIRKHDAGEAEHLLRIANVNDKYSMCTYPADPHQEVDLKNHKWGHYFLCGYKGYYEFAKSKGQDVGKPVGLDVLVDGTVPTGSGLSSSAAFVCSATIAIMAAFGDNFPKKELAQLTCECERHIGTQSGGMDQAISVMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQDAIAQVKTLSDVEGLCISFANERNSSDPVLAVKELLKEEPYTAEDIEQITVDNLPSVLGNSPTSLDVLKAAKHFKLYQRASHVYSEAKRVYAFKDAVSSSVSEEERLKKLGDLMNDSHYSCSVLYECSCPELEELVKICRDNGALGARLTGAGWGGCAVALVKEAIVPQFILSLKDKFYKSRIDRGIIDKNKVDHYVFASKPSSGAAIFHF 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9836795 9842519 + CmaCh06G015720.1 Cma06g01572 297126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01572 499 Gene3D - 37 238 IPR014721 -
Cma06g01572 499 Pfam GHMP kinases N terminal domain 154 219 IPR006204 GO:0005524
Cma06g01572 499 ProSitePatterns GHMP kinases putative ATP-binding domain. 161 172 IPR006203 GO:0005524
Cma06g01572 499 PRINTS Mevalonate kinase family signature 53 77 - -
Cma06g01572 499 PRINTS Mevalonate kinase family signature 159 181 - -
Cma06g01572 499 PRINTS Mevalonate kinase family signature 201 220 - -
Cma06g01572 499 PRINTS Mevalonate kinase family signature 434 451 - -
Cma06g01572 499 Pfam GHMP kinases C terminal 392 467 IPR013750 -
Cma06g01572 499 PRINTS Galactokinase signature 55 73 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Cma06g01572 499 PRINTS Galactokinase signature 152 170 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Cma06g01572 499 PRINTS Galactokinase signature 366 380 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Cma06g01572 499 ProSitePatterns Galactokinase signature. 55 66 IPR019741 -
Cma06g01572 499 SUPERFAMILY GHMP Kinase, C-terminal domain 245 472 IPR036554 -
Cma06g01572 499 PANTHER MEVALONATE KINASE/GALACTOKINASE 1 498 - -
Cma06g01572 499 SUPERFAMILY Ribosomal protein S5 domain 2-like 26 242 IPR020568 -
Cma06g01572 499 PIRSF Galactokinase 23 499 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Cma06g01572 499 PANTHER BNAA01G32760D PROTEIN 1 498 - -
Cma06g01572 499 Gene3D - 264 414 - -
Cma06g01572 499 TIGRFAM gal_kin: galactokinase 34 490 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Cma06g01572 499 Gene3D - 239 468 - -
Cma06g01572 499 Pfam Galactokinase galactose-binding signature 38 86 IPR019539 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01572 K18674 GALK2; N-acetylgalactosamine kinase [EC:2.7.1.157] - csv:101222674 917.916
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01572 Cma14g01579 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01572 Cma-Chr6:9836795 Cma16g00725 Cma-Chr16:3809879 5.06E-11 dispersed
Cma10g00353 Cma-Chr10:1626908 Cma06g01572 Cma-Chr6:9836795 3.10E-06 transposed
Cma14g01579 Cma-Chr14:11866424 Cma06g01572 Cma-Chr6:9836795 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g44 . . . . . Bpe14g01089 . . . . Cma06g01572 Cma14g01579 Car06g01336 Car14g01390 Sed02g1128 Cpe08g00143 Cpe03g01318 Bhi01g01101 Tan10g1088 Cmetu06g1064 . Hepe05g1365 . Lcy11g1328 . . . . . . . . Cone15ag0720 . . Lsi05g01410 . . Cme06g00801 Blo02g00471 Blo07g00132 . Bda13g00226 . . Bma02g00937 . . Cmo06g01566 Cmo14g01611 . . . . . . . . . . . . . Cla05g00717 Cam05g0784 Cec05g0790 Cco05g0786 Clacu05g0774 Cmu05g0739 Cre05g0813 . Csa03g01530 Chy06g00767 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005121 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01572 Cma_Chr06 FPKM 4.99205 5.686707 14.228473 14.992034 11.733429 13.888933 11.935974 5.333269 5.294201 5.481213