Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01592 ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTGGGAGAAGGCAATTTCGGCAAGGTAAAGTTGGCCGTCGACCTCCGTTCCGGCCGCCGTTATGCTGTCAAGATCCTTGACAAGACCAAGATTCTTCATCTCAACTTCTCTGATCAGATTAAGCGTGAAATAAGTACTCTCAAGCTTCTCAGACATCCAAATGTTGTTAGACTCTATGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTATGGAGTGCGTCACTGGTGGGGAATTGTTTGATAGAATCGAATCAAAAGGTAAGTTGGATGAAGCTGAAGGACGACGGCTCTTCCAGCAGCTTTTTGATGGGCTAAGCTACTGCCATGATAAAGGAGTTTACCACAGAGATCTCAAGCTGGAAAACGTGCTTGTTGATGATAAGGGAAACATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACCACCTGTGGAAGTCCCAACTATGTTGCACCAGAAGTACTTGCTAATAGAGGATACAATGGAGCTGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTGATTCTTACAGCTTGTCTTCCTTTTGACGAGACGAATCTGGCTCTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGCTACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAAGAGAACTCTTGACCCCAATCCCAATACTCGGATTACAATGGCAGGAATTAAAAAGGATGAATGGTTCAAGATTGACTATAATCCTGCTTCTCCTTGTTATGATGATGATGATGAGGATGAAGATATTCCATTCACTGATCAGGACGATGCCATCTCGGCGCACGATGAGGCATTTGACGGTGAAAACAGCCCAGAATCTCCCTCTATTATCAACGCGTTTGAGTTAATTGGGATGTCTTCAAGTCTGGACCTGTCCGGCTTCTTTGAGCAAGAGGATGTTTCTGAGAGGAAGACCAGATTTACATCCAACCATTCTGCCAAGGACTTGCTCGAAAGGATCGAGATTATAGCAACGGATATGGGATTCCGGGTCCAAAAGAAAAGTGGAAAGTTGAAAGTAATGCAAGAGATAAGAAATCAAAGAAGCCTAAGCAATCTCTCATTCAAAGCAGAGGTCTTTGAGATTAGCCCATTGCTTAACGTAGTGGAACTGAAGAAATCTTTTGGAGATTCCTCAGCTTACAGACAGTTGTGTGAAAGGCTATCAAATGATTTGGGCACAAACCCCGAGCTCAAACGGCATAATTCAAGTTCATTCACGTTAAATAGTACATGTTAG 1335 42.85 MRVGKYELGKTLGEGNFGKVKLAVDLRSGRRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVMECVTGGELFDRIESKGKLDEAEGRRLFQQLFDGLSYCHDKGVYHRDLKLENVLVDDKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQLPKWLSAGARNLIKRTLDPNPNTRITMAGIKKDEWFKIDYNPASPCYDDDDEDEDIPFTDQDDAISAHDEAFDGENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKTRFTSNHSAKDLLERIEIIATDMGFRVQKKSGKLKVMQEIRNQRSLSNLSFKAEVFEISPLLNVVELKKSFGDSSAYRQLCERLSNDLGTNPELKRHNSSSFTLNSTC 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9929518 9932576 + CmaCh06G015920.1 Cma06g01592 297146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01592 444 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01592 444 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01592 444 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Cma06g01592 444 Pfam NAF domain 306 365 IPR004041 GO:0007165
Cma06g01592 444 PANTHER - 1 430 - -
Cma06g01592 444 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Cma06g01592 444 PANTHER CBL-INTERACTING PROTEIN KINASE 21 1 430 - -
Cma06g01592 444 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01592 444 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Cma06g01592 444 Gene3D Kinase associated domain 1, KA1 308 426 - -
Cma06g01592 444 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Cma06g01592 444 CDD CIPK_C 310 421 - -
Cma06g01592 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01592 Cma-Chr6:9929518 Cma13g00516 Cma-Chr13:5462466 2.03E-150 dispersed
Cma14g01555 Cma-Chr14:11700857 Cma06g01592 Cma-Chr6:9929518 0 wgd
Cma17g00399 Cma-Chr17:2265968 Cma06g01592 Cma-Chr6:9929518 4.37E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68664 PF00069 Pkinase 1.60E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01592 K07198 - csv:101205987 791.571