Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01604 ATGGAGCATCGAGATCAGAGGCAGGAGAGCCATGGAGTTCATGTTTGCAACAAATGTGGATGGCCCTTTTCTAGCTCTCATCCGAGTGCCAAACGTAGGCGTGCTCACAAGAGGGTTTGTGGAACCATTGAAGGGTTCAAGCTGGTTGAGTCTGAGGCTAATACCCTTTTGGCTGTTTCAGATAATGATGGCCATCATAATAGTTCCAGTCTAGAAGTACTGGGAGGGAGTTGCAGTGACAAAGGTGTCGATGGAACGAAAACAAAACCGAAGGAATACAAAGATCAGGTGTTTTCAGATGCTGTTGCAGAGTTTTCAGAGGGCATAGGACCAAACAAATCCATGGGAGATGCTTTGAATTCGGAAAGCACGTCGAAGATGGTGGCAGAGGATGAAATGAATAGCTCCCGAGCTACGAATGACACAGAAGTCCTTGAAACTACTATCCATCAGTCAGGAAGCGAGCAGGAACACGAAATTAATCAAGAACTTTTGAATATCGAGACTGACTCTCGAATTCCGTTGTCGTGTTCTTCAACTGAAAACCAAAAAGTTGAGAATTCGATTGTTGCAGAAACCGCTATCGATCGGTCAGGAAATGTGCAGGAAACCAAAGTTGATCAAGAACTTGTGAATCTTGTGACTGATTTAGGATCTCCTCTGTTCATCTCTTCAACTGAGCAGGAAACCAAATTTAATCAAGAACTTGTGGTTCTCCACGACGATCATATGAATATGACTACTGCAAGTGACTTGTACCCGATTGAACCCGAAACTATAGTGCCTCTGCAACAAGAAAGGAACATTGATAGTGCTGAAAACATGCCTCGATGCTCCTTGCCATCTCCTGATACAAGATATGATGAAAAGAAGAATGAGGGGTTCGGCTCGTTTAAAAACTCGGCAGAAATTGCTGCACTGCCGGGAAGAATGGATAATGATAAATCCGAGCCAGTTCCGAAGATGGAAGAAACCATTGAAATACCTACAGAGCCCACTGCACATAAAGGAAACGATCTAGAGTCTTGCAGTTGTCACATCTTACTTGAGACCGATGAAATAAAAGAAAGGAATGACAACGTGCATCTGCCTTCTGTGTCGAGTGACTTAAACGTTGTAGAGCGTCCTGAGGCTTTAGTTGACGATTCAAAGGACCATAAGGATCTTAAGTTAACCAATTATGTTGTACAGGATCCTCATGAAGGAGTCGGTGGTTTGGGAGACAATTTTAAGGATCCCGTTTGTGAGGAGAGTTTTTCGACTTCCCAGGCCGAGCCATTTGATCCAGCCTCAAGAGTAGCTTCTTTTGACACTGGAGTCAAGAATGTGTCTGTTGATGTGAAAGCTGATTGTACTAGGAATAGCAACGAGGAAGTCGAAGAAATTCCTGTTAAAGAAGTGAATGCAACGCAGATTAAAAGTGAACTCGGCGAAAATGAAAAGCACGATAAGAGTCGAACCTTAAGTGATGCTGCAAATTTTGGGATTGATAGTGTTCCATCAGCCTCCTTTTCACCAGAAGTTGAACCAGTGGCCTCTTCCATGCATTCTCTCGATAATCTTTCTGAAAATGTTACCGATATCGTTTCCGATGAAAACTCAGCTGCACCAACAGGTAATCTAAAGAAACTCGACGACAATGATGTTGGAATAGGAGGGGTTCTTCTAGCTGATGATGAGAACAAAGCAGGAGCATGTGGAAGACATTCGGAGGACACAGCGCAAATTTATCTTCCAGAGGAAAAGGTTTCAACAGGGATCGATTCCACGATGCTTGAATCTACCACGAACAGCAGAGAGAATAAATGTCATGCTGTTGCCGAAGAGAGAGCAAACGAATCTCATAGGAAGTTTTCTGGGACCGAAAGCGCAGACACGAAAAGTTTTGGCATTCGTTTAGTTTCAAATGCTCAGCCAAGTGTAAAAGACGACGATCATGGCAATGATCAGTCATGTAATGTTGCAGACTTTAGCGCAGTTCAAAACTCTTCCGATATCCATTCGAACAAAGAGGCGAATTTGGTATCTGTCAGTAACGAATCTGTCACGGGAAGATCAGATGCTTCTCGGGACGGCAGTGTGAGCCAGCTTGTTGGAGATGTGAGAATTACTTCTGAAACTTGGCAAGATGATACTGTGAAAAACGACGTAAAACCGCAGCTTACATCATCCCTTCTCGATGCTTCGGTCGATGCGAGTAGTCAAACTGACAGTCTTGAAGGCAACTGGGGGTCTGTCTCAGTGCTCTCAACTCAGTCAGATTTACCAGCTGTTGTTGATGGTGAAGCAACACTGCAAGCACGAGATGAAGCAGCGGGAAACAACTCAAAGAGGATGGAAGCTGCAACCAAGAGACAACATTCCGACAGATCTGATTTGTTCGAGCCACCATCTTTTATGACCTTGGTCGAACCTGAAGGTGGAGGAATCCAAAGCACAGGCGCTTCCGAAATCCAGACCGACGAAAACCAACAGCAGCCAAATCCTGCATCTCTGCAGGCTGGGTGGTTTCCCTCGTACACTCACGTTGCGAAGGACTCACCGGGACGAAAGAAGAACGAGGCAGTTATTGCGAAGGTAACAAACTGGAGCACAGGGAAGCCACACACTGCTCTCAAGAACCTTTTGGATGATGCTGCACTTGAAAACAAACAGAAATCATCGCCAACACGAAAAGAAAACCTGGCTTCAATGATTCAGAAAGACGAAAATTCGACAGAAAATAGTGTCGTCAACGCAACAGTTGGCTCTGTTACTCGGCTGAGATCGCCTGCCTCACAGTTGGGAAACAGAGAGATTCCAAATGAATGGAACTCTCCTGCAAGGTATCCATCAGCCATCCGGAGAGAAAGGAGAAAAGGGAAGCCATATTGGGCTCAGTTTGTATGCTGTTCATCAGTGCATTAG 2907 44.82 MEHRDQRQESHGVHVCNKCGWPFSSSHPSAKRRRAHKRVCGTIEGFKLVESEANTLLAVSDNDGHHNSSSLEVLGGSCSDKGVDGTKTKPKEYKDQVFSDAVAEFSEGIGPNKSMGDALNSESTSKMVAEDEMNSSRATNDTEVLETTIHQSGSEQEHEINQELLNIETDSRIPLSCSSTENQKVENSIVAETAIDRSGNVQETKVDQELVNLVTDLGSPLFISSTEQETKFNQELVVLHDDHMNMTTASDLYPIEPETIVPLQQERNIDSAENMPRCSLPSPDTRYDEKKNEGFGSFKNSAEIAALPGRMDNDKSEPVPKMEETIEIPTEPTAHKGNDLESCSCHILLETDEIKERNDNVHLPSVSSDLNVVERPEALVDDSKDHKDLKLTNYVVQDPHEGVGGLGDNFKDPVCEESFSTSQAEPFDPASRVASFDTGVKNVSVDVKADCTRNSNEEVEEIPVKEVNATQIKSELGENEKHDKSRTLSDAANFGIDSVPSASFSPEVEPVASSMHSLDNLSENVTDIVSDENSAAPTGNLKKLDDNDVGIGGVLLADDENKAGACGRHSEDTAQIYLPEEKVSTGIDSTMLESTTNSRENKCHAVAEERANESHRKFSGTESADTKSFGIRLVSNAQPSVKDDDHGNDQSCNVADFSAVQNSSDIHSNKEANLVSVSNESVTGRSDASRDGSVSQLVGDVRITSETWQDDTVKNDVKPQLTSSLLDASVDASSQTDSLEGNWGSVSVLSTQSDLPAVVDGEATLQARDEAAGNNSKRMEAATKRQHSDRSDLFEPPSFMTLVEPEGGGIQSTGASEIQTDENQQQPNPASLQAGWFPSYTHVAKDSPGRKKNEAVIAKVTNWSTGKPHTALKNLLDDAALENKQKSSPTRKENLASMIQKDENSTENSVVNATVGSVTRLRSPASQLGNREIPNEWNSPARYPSAIRRERRKGKPYWAQFVCCSSVH 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9988207 9993470 + CmaCh06G016040.1 Cma06g01604 297158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01604 968 MobiDBLite consensus disorder prediction 273 295 - -
Cma06g01604 968 MobiDBLite consensus disorder prediction 769 797 - -
Cma06g01604 968 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 968 - -
Cma06g01604 968 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 968 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01604 - - - cpep:111800993 1756.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01604 Cma14g01529 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01529 Cma-Chr14:11572060 Cma06g01604 Cma-Chr6:9988207 8.93E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1027 . . . . . . . . . . Cma06g01604 Cma14g01529 Car06g01363 Car14g01355 Sed02g1077 . Cpe03g01286 Bhi01g01170 Tan10g1172 Cmetu07g1670 . Hepe05g1312 . Lcy11g1276 . . . . . . . . . Cone18ag0908 Cone11ag0597 . . . Cme06g00862 . . . . . . Bma02g01012 . . . Cmo14g01563 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003388 1 1 0 3 0 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 11 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01604 Cma_Chr06 FPKM 5.562422 6.53129 6.226921 5.7753 16.403561 16.022856 16.322363 20.889336 19.48451 17.684443