Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01607 ATGGAGAAGGAGTTCTTCATGAACGATGGAAGCAGTTTTTATGGGATGGATTCGAGTGTGTTGTTCAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCCCATGCCGGGGCTGTAATCGGCGGTGGAAATGGCGGCGGCGGCGGCGGCGGCGGCGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGAAGCATTTGTAGTTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGGACGAACAATAATAGTACCAATACTTCTTGTTACAATACGCCTTTGAATTCCCCTCCGATGAAAGGAAATTTATCTGTCGGTCACCGTCAAAATCTGGCTCCATTTTCGGCTGATCCAGGTTTCGCTGAAAGGACTGCGAGATTTTCTTGCTTTGGGAACAAGAATCTTGCAGTGAATGGGCAATTGTGTTCTAATGAAACTCAAGAATTGAGCAACAAGTCAATGGCTGGAGCTGGTGTGGAATCTGGCAAGCTTTCTAGGGTTTCAAGTAACAAATCCTTCAATGTTAGTGGAATTGGATCTCAAATGGGAGTTCAGAAGGGGAATTCAATGGCTAACAAGAAAGTTATGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAACGACGATTCGCGGGAGGGATCGTCAGTTTCGGAGCAGATTACAGCTGGGGAATTAGGATTCAAAGTTAACACTAGGAAAACGAAATCAGCTCAAACTGGTGAAGCAAAGAATGTGAAGGCTGCAGGGGAGAATCATAAACCAAATGGCAAGAAAATCAAACCAGAGATGGATGCTGCAAAGGGGAAGGCTGAGGCAAAAGATGCAACTCAGAAACAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAAAAGGGGTCAAGCTACAGATAGCCATAGTTTAGCTGAAAGAGTCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGATAACTGGGAAGGCAGTGATGCTTGATGAAATTATAAACTATGTTCAATCTTTGCAGCACCAAGTTGAGTTTCTTTCAATGAAATTGGCTACTGTCAATCCAAGGATGGATTTTAACATGGAAACTCTTTTGCCAAAGGATATCTTCAAAGGTTCGAGTTCGTTACCGCATACGATTTACCCTATTGATTCGTCTGTGCCCACATTTGCATATGAGTATCAATCTATGAACATTCCTCCTCTTCATAGTGATCAAACGCAGGGCGGATACCACGAAATGGGGAATGGAATCCAAATTTCCAAGTTTTGGGAGGATGAACTCCACAGTGTAGTTCAGATGGGTTATGGACAAACCCAGCTGCAGAATCCTCGTGATGAGATGAAAAGTGAACTCCACTCATTCTTTTGGAGAGCTCTTCAAGAACTAATTGCAAGAACTAATTGCAGCAGCAGCAGCAGCAGCAAAGCTGATGGTGGCCTCAAGTTTTTATCAGACCACATTTGA 1560 43.91 MEKEFFMNDGSSFYGMDSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGAVIGGGNGGGGGGGGDNLMMRELIGRLGSICSSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPMKGNLSVGHRQNLAPFSADPGFAERTARFSCFGNKNLAVNGQLCSNETQELSNKSMAGAGVESGKLSRVSSNKSFNVSGIGSQMGVQKGNSMANKKVMNRFSRSSTPENDDSREGSSVSEQITAGELGFKVNTRKTKSAQTGEAKNVKAAGENHKPNGKKIKPEMDAAKGKAEAKDATQKQNNDNSKPPEPPKDYIHVRAKRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKITGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPRMDFNMETLLPKDIFKGSSSLPHTIYPIDSSVPTFAYEYQSMNIPPLHSDQTQGGYHEMGNGIQISKFWEDELHSVVQMGYGQTQLQNPRDEMKSELHSFFWRALQELIARTNCSSSSSSKADGGLKFLSDHI 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10016680 10019254 - CmaCh06G016070.1 Cma06g01607 297161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01607 519 PANTHER BHLH TRANSCRIPTION FACTOR 21 427 - -
Cma06g01607 519 MobiDBLite consensus disorder prediction 215 311 - -
Cma06g01607 519 Gene3D - 317 391 IPR036638 GO:0046983
Cma06g01607 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 390 IPR036638 GO:0046983
Cma06g01607 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 370 IPR011598 GO:0046983
Cma06g01607 519 MobiDBLite consensus disorder prediction 264 296 - -
Cma06g01607 519 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 427 IPR024097 GO:0006355
Cma06g01607 519 SMART finulus 326 376 IPR011598 GO:0046983
Cma06g01607 519 CDD bHLH_AtBPE_like 310 395 - -
Cma06g01607 519 Pfam Helix-loop-helix DNA-binding domain 324 371 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00083 Cma-Chr6:464304 Cma06g01607 Cma-Chr6:10016680 1.83E-39 dispersed
Cma06g01607 Cma-Chr6:10016680 Cma08g00243 Cma-Chr8:1373639 3.60E-83 dispersed
Cma12g00704 Cma-Chr12:3874970 Cma06g01607 Cma-Chr6:10016680 8.54E-50 dispersed
Cma14g01524 Cma-Chr14:11539744 Cma06g01607 Cma-Chr6:10016680 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35289 PF00010 HLH 1.50E-05 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01607 - - cmax:111470804 931.784