Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01613 ATGGAGAAGGACAAACCCCAGAGCCATTCTGGTGGATTTCTATCCCCATCAAGTCGTTACCCAGGTCTTTCTCCAACTGGAAGCAGTTTCAATGGAAAATCTGAGGCAACCTCGTCTTCAATGACGCTTCCTCCAATGGCTTCGGGTGCTAATTCTGATTCAAGTCAATTCAGTCACGGAATGTCCACTAATTCTAATCAGTTCAGCCATGATATTTGTCGGATGCCTGATAACCCGCCAAGAAATATTGGTCACAGACGTGCTCATTCAGAAATACTGACCCTTCCTGATGATATATGTTTCAACAGTGACCTAGGTGTCATTGGCAGTGCTGATGGGCCTTCCTTTTCTGATGACACTGAGGAAGATTTGCTGTCCATGTACCTCGACATGGAGAAATTCAATTCTTCCTCTGCTACCTCTGCAATACAAGTTGGCGAGTCATCTGCTGCTGTTGTAGATGCAAGATCAACTCCTACTTCAGGAATTGGAGCAGCAACATCTAAAGACGATGCTGCTGTTGGCTTGAGGGAGAGGCCAAGAGTAAGACACCAGCATAGCCAGTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCAGGCTCTGAAGAAGTCTCTGCTGCTGACTCCAAGAAATCCACGTCAGCTACAAAGCTTGCTGAGCTTGCACTAATTGACCCCAAACGTGCGAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCTGACTCTGCAAACAGAGGGAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAATGGTCTTACTGCTGAGAACAGTGAACTAAAGCTACGGTTGCAGACAATGGAGCAGCAGGTTCACCTACAAGATGCTCTAAATGAAGCACTGAAAGAGGAAATTCAGCATTTCAAAGTATTGACTGGTCAATCAATCCCAAATGGTGGATCAATGACAAACTTTGCTTCCTATGGAGCTGGCCAACAATTTTACCCAAACAGTCAAGCAATGCACACTTTGTTAACTGCTCAACAGTTTCAGCAACTTCAAATCCATTCACAGCAGCAGCAGCAGCAGCAACAACATTTCCAGTACCATCAGATGCATCAGCTTCAGCAACAATCAACTGGCGACATCAAAATGAAAGGTCCGACTTCTTCTCCGAGTCCGAAAGACAGCAACACATCAGATACGTCCTCTCTCACTTGTTGA 1260 45.4 MEKDKPQSHSGGFLSPSSRYPGLSPTGSSFNGKSEATSSSMTLPPMASGANSDSSQFSHGMSTNSNQFSHDICRMPDNPPRNIGHRRAHSEILTLPDDICFNSDLGVIGSADGPSFSDDTEEDLLSMYLDMEKFNSSSATSAIQVGESSAAVVDARSTPTSGIGAATSKDDAAVGLRERPRVRHQHSQSMDGLSTIKPEMLVSGSEEVSAADSKKSTSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVLTLQTEGTSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHFKVLTGQSIPNGGSMTNFASYGAGQQFYPNSQAMHTLLTAQQFQQLQIHSQQQQQQQQHFQYHQMHQLQQQSTGDIKMKGPTSSPSPKDSNTSDTSSLTC 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10037514 10041213 - CmaCh06G016130.1 Cma06g01613 297167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01613 419 SMART brlzneu 227 291 IPR004827 GO:0003700|GO:0006355
Cma06g01613 419 MobiDBLite consensus disorder prediction 376 419 - -
Cma06g01613 419 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 414 - -
Cma06g01613 419 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 414 - -
Cma06g01613 419 Coils Coil 282 316 - -
Cma06g01613 419 Gene3D - 230 305 - -
Cma06g01613 419 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700|GO:0006355
Cma06g01613 419 MobiDBLite consensus disorder prediction 10 71 - -
Cma06g01613 419 MobiDBLite consensus disorder prediction 1 71 - -
Cma06g01613 419 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700|GO:0006355
Cma06g01613 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700|GO:0006355
Cma06g01613 419 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01613 Cma-Chr6:10037514 Cma04g02444 Cma-Chr4:16823509 2.09E-54 dispersed
Cma06g01613 Cma-Chr6:10037514 Cma06g01616 Cma-Chr6:10049991 0 proximal
Cma14g01518 Cma-Chr14:11486420 Cma06g01613 Cma-Chr6:10037514 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35290 PF00170 bZIP_1 3.20E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01613 - - cmax:111470876 662.144