Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g01613 | ATGGAGAAGGACAAACCCCAGAGCCATTCTGGTGGATTTCTATCCCCATCAAGTCGTTACCCAGGTCTTTCTCCAACTGGAAGCAGTTTCAATGGAAAATCTGAGGCAACCTCGTCTTCAATGACGCTTCCTCCAATGGCTTCGGGTGCTAATTCTGATTCAAGTCAATTCAGTCACGGAATGTCCACTAATTCTAATCAGTTCAGCCATGATATTTGTCGGATGCCTGATAACCCGCCAAGAAATATTGGTCACAGACGTGCTCATTCAGAAATACTGACCCTTCCTGATGATATATGTTTCAACAGTGACCTAGGTGTCATTGGCAGTGCTGATGGGCCTTCCTTTTCTGATGACACTGAGGAAGATTTGCTGTCCATGTACCTCGACATGGAGAAATTCAATTCTTCCTCTGCTACCTCTGCAATACAAGTTGGCGAGTCATCTGCTGCTGTTGTAGATGCAAGATCAACTCCTACTTCAGGAATTGGAGCAGCAACATCTAAAGACGATGCTGCTGTTGGCTTGAGGGAGAGGCCAAGAGTAAGACACCAGCATAGCCAGTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCAGGCTCTGAAGAAGTCTCTGCTGCTGACTCCAAGAAATCCACGTCAGCTACAAAGCTTGCTGAGCTTGCACTAATTGACCCCAAACGTGCGAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCTGACTCTGCAAACAGAGGGAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAATGGTCTTACTGCTGAGAACAGTGAACTAAAGCTACGGTTGCAGACAATGGAGCAGCAGGTTCACCTACAAGATGCTCTAAATGAAGCACTGAAAGAGGAAATTCAGCATTTCAAAGTATTGACTGGTCAATCAATCCCAAATGGTGGATCAATGACAAACTTTGCTTCCTATGGAGCTGGCCAACAATTTTACCCAAACAGTCAAGCAATGCACACTTTGTTAACTGCTCAACAGTTTCAGCAACTTCAAATCCATTCACAGCAGCAGCAGCAGCAGCAACAACATTTCCAGTACCATCAGATGCATCAGCTTCAGCAACAATCAACTGGCGACATCAAAATGAAAGGTCCGACTTCTTCTCCGAGTCCGAAAGACAGCAACACATCAGATACGTCCTCTCTCACTTGTTGA | 1260 | 45.4 | MEKDKPQSHSGGFLSPSSRYPGLSPTGSSFNGKSEATSSSMTLPPMASGANSDSSQFSHGMSTNSNQFSHDICRMPDNPPRNIGHRRAHSEILTLPDDICFNSDLGVIGSADGPSFSDDTEEDLLSMYLDMEKFNSSSATSAIQVGESSAAVVDARSTPTSGIGAATSKDDAAVGLRERPRVRHQHSQSMDGLSTIKPEMLVSGSEEVSAADSKKSTSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVLTLQTEGTSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHFKVLTGQSIPNGGSMTNFASYGAGQQFYPNSQAMHTLLTAQQFQQLQIHSQQQQQQQQHFQYHQMHQLQQQSTGDIKMKGPTSSPSPKDSNTSDTSSLTC | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10037514 | 10041213 | - | CmaCh06G016130.1 | Cma06g01613 | 297167 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g01613 | 419 | SMART | brlzneu | 227 | 291 | IPR004827 | GO:0003700|GO:0006355 | |
Cma06g01613 | 419 | MobiDBLite | consensus disorder prediction | 376 | 419 | - | - | |
Cma06g01613 | 419 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 414 | - | - | |
Cma06g01613 | 419 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 414 | - | - | |
Cma06g01613 | 419 | Coils | Coil | 282 | 316 | - | - | |
Cma06g01613 | 419 | Gene3D | - | 230 | 305 | - | - | |
Cma06g01613 | 419 | Pfam | bZIP transcription factor | 231 | 285 | IPR004827 | GO:0003700|GO:0006355 | |
Cma06g01613 | 419 | MobiDBLite | consensus disorder prediction | 10 | 71 | - | - | |
Cma06g01613 | 419 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
Cma06g01613 | 419 | CDD | bZIP_plant_RF2 | 232 | 281 | IPR044759 | GO:0003700|GO:0006355 | |
Cma06g01613 | 419 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 229 | 292 | IPR004827 | GO:0003700|GO:0006355 | |
Cma06g01613 | 419 | SUPERFAMILY | Leucine zipper domain | 231 | 282 | IPR046347 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01613 | Cma-Chr6:10037514 | Cma04g02444 | Cma-Chr4:16823509 | 2.09E-54 | dispersed | |
Cma06g01613 | Cma-Chr6:10037514 | Cma06g01616 | Cma-Chr6:10049991 | 0 | proximal | |
Cma14g01518 | Cma-Chr14:11486420 | Cma06g01613 | Cma-Chr6:10037514 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35290 | PF00170 | bZIP_1 | 3.20E-08 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g01613 | - | - | cmax:111470876 | 662.144 |