Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01616 ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTTCCCCCATCGAGTCGCTACTCGAGTCTTTCACCAACTGCAAGTAGTTTCAATGGAAAATCCGAGACTGCTTCGTGTTCAATGTCACTTCCTCCAATGGCTCCGAGTCCTAATTCTTCCGATTCGGGTCAATTTGGTCGTGGAATGTCCAGTGATTCCAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATGGGTCATCGACGTGCCCATTCCGAGATTCTGACTCTTCCTGATGATATTTGTTTTGACAGTGACCTTGGTGTCATTGGTGGTGCTGACGGGCCTTCCTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCCTCTGCTACATCTGCAATGCAAGTTGGGGAGTCATCTTCCGCTGCTGTAGAGGCAAGATCAACTCCTACTTCAGGAATTGGAGCTGCAACTTCAAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTCAGGCACCAGCACAGCCATTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCGGGGTCTGAAGAAGTCTCTGCCGCTGATTCCAAGAAAGCTATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAAGCAACCTCATTATCTGCTCAATTAACCCTCTTGCAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTTAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCATTGAAAGAGGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAATTTTGCATCCTTTGGAGCTAGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTGACTGCTCAGCAATTTCAGCAACTACAAATCCACTCACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACATTTTCAGTACCATCAGCTACATCAGCTTCAGCAGCAACCAACGGGAGACATCAAAATGAAAGGACCGACATCTTCTCCAAATAGTTGA 1236 46.04 MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGESSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGASQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQQQHFQYHQLHQLQQQPTGDIKMKGPTSSPNS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10049991 10055022 - CmaCh06G016160.1 Cma06g01616 297170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01616 411 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 230 293 IPR004827 GO:0003700|GO:0006355
Cma06g01616 411 CDD bZIP_plant_RF2 233 282 IPR044759 GO:0003700|GO:0006355
Cma06g01616 411 SUPERFAMILY Leucine zipper domain 232 283 IPR046347 GO:0003700|GO:0006355
Cma06g01616 411 Gene3D - 231 284 - -
Cma06g01616 411 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 411 - -
Cma06g01616 411 Pfam bZIP transcription factor 232 286 IPR004827 GO:0003700|GO:0006355
Cma06g01616 411 MobiDBLite consensus disorder prediction 1 86 - -
Cma06g01616 411 MobiDBLite consensus disorder prediction 151 173 - -
Cma06g01616 411 SMART brlzneu 228 292 IPR004827 GO:0003700|GO:0006355
Cma06g01616 411 MobiDBLite consensus disorder prediction 11 70 - -
Cma06g01616 411 MobiDBLite consensus disorder prediction 392 411 - -
Cma06g01616 411 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 411 - -
Cma06g01616 411 MobiDBLite consensus disorder prediction 151 166 - -
Cma06g01616 411 Coils Coil 248 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01616 Cma-Chr6:10049991 Cma14g01518 Cma-Chr14:11486420 0 dispersed
Cma19g00702 Cma-Chr19:7197762 Cma06g01616 Cma-Chr6:10049991 7.67E-51 dispersed
Cma06g01613 Cma-Chr6:10037514 Cma06g01616 Cma-Chr6:10049991 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35291 PF00170 bZIP_1 1.00E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01616 - - cmax:111470876 725.702