Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g01621 | ATGTACCAATCAACTTCCTCCTCTTCTTCCTCTCACAATTCCATGCCCTCCTCCCACGCCGGCGCAGGGGGCGGCGCCTCCGGTGGTGGAGGCCTCACTCGCTATGGTTCTGCACCTGGCTCTTTGCTGAATTCGGCCGTCGATTCTGTGATCGGGAAGCGCCATCCAGACTCCGATGCGTTTCTCCGTACGCCGCCGTCGTTCGGTGGTCACTCCTTCTCCTCCGCTGAGTCCTCCGTTGTGGAGTCCTCTCGGAAGGTTGTTCAATCGTCGTCTACTTCCAACGATCTGAAATCGTCGGCGGCAGCTGCCTTGCAACGGCCGTACGGACTCCACGATTTGGCGCTTGAGGATTTCTCTACGGCGAGAGATTTTAATGGCAATGGTGGCCAATCGTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTCGCTGAAGGAACCGGAGGGTTTTCATTGACAAGGGGAGGGGGAGGAGGAATTGGAAGGTTGAAGTCACAGCTGAGCTTCAGTGGTGGGCAGGATTCGGTGTCTCAAATGTCTTCCATGAGTGAGAGTGTCGTGGAGGGTAGCAGCTCCTATTCCTTTGCCCCCACAGCCTTTGCCATGGACTCTTGGGACACCTCCAACTCCATTGCCTTCGCTGCCCCTCATCATCCCAAAAGATCCAAGCTTCTGCACTCTGATGGAGACTTTTTCACCGGCCTCGACTCTCAGTTTAGTCTGTCGCAAACAAGTTTTGAAATTGCAACCGTAGAGAGGTTGCTTCAAATCCCAGAAGACTCCGTGCCTTGTAAGATCCGAGCCAAACGTGGCTGTGCCACTCATCCTCGCAGCATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAACTTGTTCCGAACATGGATAAGCAAACGAGCTATTCAGACATGTTGGACTTAGCAGTGCAGCACATCAAAGGCCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTAAGAATTGCACGTGTGGAAGCAAAGAATGCTCATAA | 1068 | 52.72 | MYQSTSSSSSSHNSMPSSHAGAGGGASGGGGLTRYGSAPGSLLNSAVDSVIGKRHPDSDAFLRTPPSFGGHSFSSAESSVVESSRKVVQSSSTSNDLKSSAAAALQRPYGLHDLALEDFSTARDFNGNGGQSSSSSPLVRQRSSPAGFLGHLSVAEGTGGFSLTRGGGGGIGRLKSQLSFSGGQDSVSQMSSMSESVVEGSSSYSFAPTAFAMDSWDTSNSIAFAAPHHPKRSKLLHSDGDFFTGLDSQFSLSQTSFEIATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVKNCTCGSKECS | 355 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 10091681 | 10093973 | + | CmaCh06G016210.1 | Cma06g01621 | 297175 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g01621 | 355 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 286 | 344 | IPR036638 | GO:0046983 | |
| Cma06g01621 | 355 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 283 | 333 | IPR011598 | GO:0046983 | |
| Cma06g01621 | 355 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cma06g01621 | 355 | PANTHER | TRANSCRIPTION FACTOR BHLH129 | 31 | 348 | - | - | |
| Cma06g01621 | 355 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 31 | 348 | - | - | |
| Cma06g01621 | 355 | SMART | finulus | 289 | 339 | IPR011598 | GO:0046983 | |
| Cma06g01621 | 355 | Coils | Coil | 323 | 350 | - | - | |
| Cma06g01621 | 355 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Cma06g01621 | 355 | CDD | bHLH_AtbHLH_like | 288 | 340 | IPR045239 | - | |
| Cma06g01621 | 355 | Pfam | Helix-loop-helix DNA-binding domain | 288 | 334 | IPR011598 | GO:0046983 | |
| Cma06g01621 | 355 | Gene3D | - | 284 | 352 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g01621 | Cma-Chr6:10091681 | Cma14g00436 | Cma-Chr14:2052508 | 7.38E-47 | dispersed | |
| Cma14g01513 | Cma-Chr14:11430857 | Cma06g01621 | Cma-Chr6:10091681 | 2.63E-109 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35292 | PF00010 | HLH | 9.40E-09 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g01621 | - | - | csv:101205392 | 417.157 |