Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01623 ATGAAATCTTCTCTTGCCCTCATTTTCAAACTCCCCGCCATTCTGTTCCCCAGATTCTCGATTATCCCCACCACCGCCATTTCCGCCACCATGTCCACTTCCGATCACTCTTCCCCCGCCTTTGACAGACCTCGCTCCGTCGTCAAGAAGGTTCTCGCTAAACTCCAGCACGAAGGCGATGGCGCCGTTGTTCGTCGAGGCATCGGAAGGAGCGATTTGAAGAATCTGGATCCATTTCTGATGCTCGATGATTTTTCCGTTAGTCCGCCGGCTGGATTCCCCGATCATCCTCACAGAGGTTTTGAGACAGTGACTTACATGTTACAGGGAGGAATTACTCATCAAGATTTTGCTGGCCACAAGGGTACGATCAGAACAGGTGATGTACAGTGGATGACAGCAGGAAGAGGTATTATCCATTCTGAAATGCCTGCTGGCGAAGGTCCTCAAAAGGGATTGCAGCTTTGGATCAATCTTGCAGCACATGACAAAATGATGGAACCAAAATATCAGGAGATTCTAAGCAACGACATTCCGAGAGCGGAGAACGACGGTGTCGAGGTTAACGTTATAGCAGGAGAGTCCATGGGAGTCCATTCTCCAATCTACACTCAAACGCCAACGATGTACCTCGACTTCACATTGAAACCAAAAGCTCAAGTGCATCAAAGCATCCCAGAGACATGGACTTCTTTCGTATACATAATCGACGGGGAAGGGGTATTCGGGTCGTTGAACTCGTCCCGGGTGGCGGCTCACCATGTCCTAGTGTTAGGACCGGGAGATGGGCTGAGTGTATGGAACAGATCTTCAAATCCATTGAGGTTTATTCTTGTAGCAGGGAAGCCACTGAATGAACCAATTGTTCAACATGGACCATTTGTGATGAACTCCCAATCTGAAATTGACCAAGCCATTGAGGACTACCACTATGCCAAAAATGGGTTTGAAATGGCAAAGCATTGGAGATCCCAGTGA 978 48.36 MKSSLALIFKLPAILFPRFSIIPTTAISATMSTSDHSSPAFDRPRSVVKKVLAKLQHEGDGAVVRRGIGRSDLKNLDPFLMLDDFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAGEGPQKGLQLWINLAAHDKMMEPKYQEILSNDIPRAENDGVEVNVIAGESMGVHSPIYTQTPTMYLDFTLKPKAQVHQSIPETWTSFVYIIDGEGVFGSLNSSRVAAHHVLVLGPGDGLSVWNRSSNPLRFILVAGKPLNEPIVQHGPFVMNSQSEIDQAIEDYHYAKNGFEMAKHWRSQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10098128 10100118 - CmaCh06G016230.1 Cma06g01623 297177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01623 325 PANTHER PIRIN-LIKE PROTEIN 34 325 - -
Cma06g01623 325 PANTHER PIRIN-RELATED 34 325 IPR012093 -
Cma06g01623 325 CDD cupin_pirin_C 207 283 - -
Cma06g01623 325 PIRSF Pirin 43 323 IPR012093 -
Cma06g01623 325 Pfam Pirin 65 157 IPR003829 -
Cma06g01623 325 Gene3D Jelly Rolls 58 310 IPR014710 -
Cma06g01623 325 Gene3D Jelly Rolls 179 284 IPR014710 -
Cma06g01623 325 CDD cupin_pirin_N 62 159 - -
Cma06g01623 325 SUPERFAMILY RmlC-like cupins 45 323 IPR011051 -
Cma06g01623 325 Pfam Pirin C-terminal cupin domain 210 314 IPR008778 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01623 Cma14g01512 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01623 Cma-Chr6:10098128 Cma16g00937 Cma-Chr16:7193013 6.98E-139 dispersed
Cma14g01512 Cma-Chr14:11428180 Cma06g01623 Cma-Chr6:10098128 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01623 K06911 - csv:101205861 585.874