Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01633 ATGAAGAAGGCCTTCGATCAAACTGTTAGGGACTTAAAGCGAGAGGTCAATAAGACCGTGCTCAAAATTCCAAAAATAGAGCAGAAGGTTTTGGATGCCACTAGCAACGAGCCTTGGGGTCCTCATGGATCACTTCTTGCAGATATAGCACAGGCAACTCGAAATTATCATGAATATCAAATGATTATGGGAGTAATCTGGAAGCGGATTAACGATACTGGCAAGAATTGGAGGCATGTTTACAAGGGTTTGACTGTTTTGGAGTACTTGGTGGGTCATGGGTCGGAGCGTGTCATAGATGACATCAGAGAACATGTCTATCAGATATCAACCTTATCTAATTTTCAATACATTGACTCAAGCGGGAGGGATCAGGGTAACAATGTTAGAAAGAAATCGCAAAATCTTGTTGCCCTTGTAAATGATAAAGAGAGGATTGTTGAGGTCAGACAGAAAGCTGCTGCTAATAAGGACAAGTTTCACAGTGCAGCATCTATGGGCAGTATGTATAGACCAAGTGCAGGAGCATATGACGACCGCTATGAAGGACGATACGGAAGCCGTGATGGAGACAGAAATGTCGATTCTTATGGGAGGGAAAGAGAATATGGTTTTAGAGATGATCGTTCCGGTGGAAATGAGGATTCATATGGTCGTGATTATGAAGACCGCTATAATAGAGATGGTTATAGGGATGATGATTATCGAGGAAGAAGCCGAAGCGTTGATGACTATCAGTATGGTTCAAGGAGCCGGAGCTCTGACAGAAATGGAGAACGTACATATGACGATGGTCAAGTTTCTTCTCGCAACAATGATACAAGAGCGAACGAGCCATCTCAGGATGAAAGGCCGCTTGAACGTAAATTTTCAGAACAGAATATTGGTGCTCCACCTAGTTACGAAGAAGCTGTGACTGAATCTGAAAGCAATGTGCAAAGTCAAAGAGATGTTGAGGCTCCACCGACTGCTGCTCCGAGAGCATTTCCCCCACCCACATCCAGTACTCAAAGCCAGCTAACGACTCATGGAACTGCTGCATCTCCACCTACCCAGGGACTTGATGGTTCTGATGAATTCGACCCCCGTGGTTCAGTTGCAGCTGCTCCACCTGCCACAAGCAATTTAGAGACAAATTTATTAGACTCCTTGGCCTTAGTGCCTGTTGGGCCAGTAACATCAACTGCAGACTATGAGGGTCATGTTCAGACAAGCTCTGCTGTGGGATACCATGCTCAAAATCAGACTTTCGAAGACGCATTCGGTGACTCGCCTTTTAAAGCCATTTCTTCCTCTGATGTCCAAGATCAAGCACATGTCCAGCATGGGGAATCATTTTCTGTAGCAACTTATTCCACACCGAACATCCCCGTTCAACCCCAACCGAATTTTCCGCAGCCTCGTGAAGAGTCTCTGCAACATCAAAATATTGGTGTACTAGCTGATCTCCTTCCTCCTCCTGAACCTTTACCTGCTGTTGTTTCACAGCCTGCATTCACAGTATCAAACAGCCAACAAGCTGTATCTGGCTTGCCTGCACAGCCAAATTCTAATAACTTGGGGACTTATCAGCAACATGGAAACGTAGCTCCCGTAAGTTTTCAAACTCCAACAGAACCCGGGAGAGAGTTTAACAATGGGATGTTCATGGTTCCGGGAAGTGCACCGACACATGTCAATTCATATATGGTTCCTCCAAATGCTGGACCTAGTACACATCCCAACAATTTTGGATATTCTCAGGATGGTTCAGTAGCTCCCACGAGTTCTCATGTCGCACTTCAAACTACTCAACCGCCTGCTCAGCTTCCTAGTGGGAACTTCAATCCGCCACACGCCTCTATAGCTCCAGTAGCTTCTCAAGTGTCTTACCAAGCCCCTAATTTTCCTGTTAACGTATCTAACCCTGATGTTATGGGTAGTTTTCAAGCAGGAAACTATACATCCATGGCTTCCCAGCAAATTCCTCCATCTGGATCGCTATCAAATGCATCTCAACCTTCAAAGAACAAGTTCGAGACCAAGTCTACAGTATGGACCGACACATTAAACCGAGGGCTTGTCAATTTAAACATATCTGGACCTAAAACAAACCCATTGGCGGATATTGGTGTTGATTTTGAAGCCCTCAATAGGAAAGAGAAAAGGATGGAGAAGCCTAGTACAGCTCCAGTGATGTCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCCGGGATCGGCCGAGCTGGTGCGAGTGCACTAAGGCCACCTCCAAACGCAATGTCGGGTCCGGGAATGGGAATGGGTATGAACCCCAATCCTGGCATGGGCATGGGTATGAGAGGAGGATATGGAGGCATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGTATGGTGCAACACGGAATCCAGATGCAGCAACCTCGAGCGAATGTGCCTGGTGTATACAACCCGATGATGGGTGCTGGTGGCTATGCCCCTCAACAGCCACCGTACGGCGGCTACCGATGA 2502 46.4 MKKAFDQTVRDLKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGVIWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHVYQISTLSNFQYIDSSGRDQGNNVRKKSQNLVALVNDKERIVEVRQKAAANKDKFHSAASMGSMYRPSAGAYDDRYEGRYGSRDGDRNVDSYGREREYGFRDDRSGGNEDSYGRDYEDRYNRDGYRDDDYRGRSRSVDDYQYGSRSRSSDRNGERTYDDGQVSSRNNDTRANEPSQDERPLERKFSEQNIGAPPSYEEAVTESESNVQSQRDVEAPPTAAPRAFPPPTSSTQSQLTTHGTAASPPTQGLDGSDEFDPRGSVAAAPPATSNLETNLLDSLALVPVGPVTSTADYEGHVQTSSAVGYHAQNQTFEDAFGDSPFKAISSSDVQDQAHVQHGESFSVATYSTPNIPVQPQPNFPQPREESLQHQNIGVLADLLPPPEPLPAVVSQPAFTVSNSQQAVSGLPAQPNSNNLGTYQQHGNVAPVSFQTPTEPGREFNNGMFMVPGSAPTHVNSYMVPPNAGPSTHPNNFGYSQDGSVAPTSSHVALQTTQPPAQLPSGNFNPPHASIAPVASQVSYQAPNFPVNVSNPDVMGSFQAGNYTSMASQQIPPSGSLSNASQPSKNKFETKSTVWTDTLNRGLVNLNISGPKTNPLADIGVDFEALNRKEKRMEKPSTAPVMSTINMGKAMGSGSGIGRAGASALRPPPNAMSGPGMGMGMNPNPGMGMGMRGGYGGMNQPMGGMGMNMGMVQHGIQMQQPRANVPGVYNPMMGAGGYAPQQPPYGGYR 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10167263 10173274 + CmaCh06G016330.1 Cma06g01633 297187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01633 833 MobiDBLite consensus disorder prediction 505 525 - -
Cma06g01633 833 MobiDBLite consensus disorder prediction 168 371 - -
Cma06g01633 833 PANTHER EPSIN/ENT-RELATED 1 823 - -
Cma06g01633 833 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Cma06g01633 833 SMART enth_2 24 150 IPR013809 -
Cma06g01633 833 Pfam ENTH domain 25 146 IPR013809 -
Cma06g01633 833 CDD ENTH 26 142 - -
Cma06g01633 833 MobiDBLite consensus disorder prediction 177 263 - -
Cma06g01633 833 MobiDBLite consensus disorder prediction 304 318 - -
Cma06g01633 833 MobiDBLite consensus disorder prediction 650 669 - -
Cma06g01633 833 MobiDBLite consensus disorder prediction 276 290 - -
Cma06g01633 833 SUPERFAMILY ENTH/VHS domain 6 149 IPR008942 -
Cma06g01633 833 Gene3D - 23 163 IPR008942 -
Cma06g01633 833 MobiDBLite consensus disorder prediction 575 614 - -
Cma06g01633 833 MobiDBLite consensus disorder prediction 451 472 - -
Cma06g01633 833 MobiDBLite consensus disorder prediction 330 352 - -
Cma06g01633 833 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 1 823 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01633 K12471 EPN; epsin - csv:101208671 1160.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00111 Cma-Chr5:477881 Cma06g01633 Cma-Chr6:10167263 2.17E-12 dispersed
Cma06g01633 Cma-Chr6:10167263 Cma17g00582 Cma-Chr17:4824366 9.31E-154 dispersed
Cma14g01498 Cma-Chr14:11338083 Cma06g01633 Cma-Chr6:10167263 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1120 . . . . . . . . Cmo08g00091 . Cma06g01633 . Car06g01388 . . Cpe08g00095 . . . . . . . . . . . . . . . . Cone15ag0602 . . . . . . . . . . . . . . . Cmo06g01632 . . . Car08g00073 . . Cpe17g00997 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01633 Cma_Chr06 FPKM 52.208504 59.871239 55.16502 56.848309 36.1726 34.889278 32.348785 38.93914 37.611931 38.395329