Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01635 ATGGACGGTCGAGATCATCATCGTTTTGGTTTAGTGGCGCATGCCCCTCCTCCTGGTTACTTCATACGTTTGAACAATACTGGATCGAAAGACGATTTATATCTAAGTAAAAGGGATAGAATGCGCAGGTGGCTTTGTTGTGCTTGTCAAGTTGAAGAACCCTACCCATCAGCGGAAAGTGAGCACCTAAAAAGCCCAGGAAGTTATGGAGATGGTGGTCACCAAAAGGTCTCAAAAGAGCCAGCTTCTCACAAATCGGAAGCACCAAAAGCTCCACCTCCCATAGATGTTCCAGCGTTGTCTCTGGAAGAATTGAAAGAAAAGACTGACAACTTTGGGTCCAAGGCATTGATTGGTGAAGGGTCTTATGGTCGAGTTTATTATGCTAGATTAAACGATGGGAAAACTGTGGCAGTAAAGAAGCTGGATGTATCCTCCGAGCCTGACTCGAGTGTTGACTTTTTGACTCAGGTTTCTACAGTCTCAAGGTTGAAACATGAAAATTTTGTTGAGTTGCACGGATACTGCGTTGAAGGAAATCTTCGTGTTCTTGCATATGAGTTTGCAACTATGGGTTCTCTACATGACGTATTGCACGGTAGAAAGGGAGTGCAAGGGGCACAGCCTGGTCCAGTGCTCGATTGGATGCAACGTGTGAGAATTGCTGTCGATGCAGCTAGAGGATTGGAGTACTTGCATGAGAAGGTTCAACCTTCTATCATACATAGAGATGTTAGATCCAGCAATGTGCTTCTCTTTGAAGAGTATAAAACAAAGATTGCAGACTTTAACCTTTCTAACCAAGCTCCGGACATGGCTGCACGACTTCATTCTACTCGTGTTTTAGGAACTTTTGGCTATCATGCCCCAGAGTATGCAATGACAGGACAATTGACACAAAAGAGTGACGTCTACAGCTTTGGAGTCGTTCTACTCGAGCTTTTGACTGGGAGGAAACCCGTTGATCACACCATGCCTCGCGGGCAGCAGAGTCTTGTTACTTGGGCTACTCCAAGGCTAAGTGAAGACAAAGTTAGACAATGTGTTGATCCAAGGCTGAAGGGTGAATATCCACCTAAAGGAGTTGCCAAGCTGGCTGCTGTGGCAGCACTGTGTGTGCAATATGAAGCCGAGTTCAGGCCGAACATGAGCATTGTCGTCAAGGCTCTCCAGCCGCTTCTAAAGCCACCTACGCCTATGCCTGCATCGTCTCCTGAACCTTGA 1224 46.24 MDGRDHHRFGLVAHAPPPGYFIRLNNTGSKDDLYLSKRDRMRRWLCCACQVEEPYPSAESEHLKSPGSYGDGGHQKVSKEPASHKSEAPKAPPPIDVPALSLEELKEKTDNFGSKALIGEGSYGRVYYARLNDGKTVAVKKLDVSSEPDSSVDFLTQVSTVSRLKHENFVELHGYCVEGNLRVLAYEFATMGSLHDVLHGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLLFEEYKTKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVRQCVDPRLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKPPTPMPASSPEP 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10181522 10185501 - CmaCh06G016350.1 Cma06g01635 297189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01635 407 MobiDBLite consensus disorder prediction 57 97 - -
Cma06g01635 407 SMART tyrkin_6 112 390 IPR020635 GO:0004713|GO:0006468
Cma06g01635 407 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 26 403 - -
Cma06g01635 407 Pfam Protein tyrosine and serine/threonine kinase 117 390 IPR001245 GO:0004672|GO:0006468
Cma06g01635 407 ProSiteProfiles Protein kinase domain profile. 112 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01635 407 SUPERFAMILY Protein kinase-like (PK-like) 92 390 IPR011009 -
Cma06g01635 407 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 26 403 - -
Cma06g01635 407 Gene3D Phosphorylase Kinase; domain 1 84 188 - -
Cma06g01635 407 Gene3D Transferase(Phosphotransferase) domain 1 190 398 - -
Cma06g01635 407 ProSitePatterns Tyrosine protein kinases specific active-site signature. 240 252 IPR008266 GO:0004672|GO:0006468
Cma06g01635 407 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01635 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - csv:101215403 735.717
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01635 Cma14g01489 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01635 Cma-Chr6:10181522 Cma08g00083 Cma-Chr8:434652 0 dispersed
Cma14g01489 Cma-Chr14:11296614 Cma06g01635 Cma-Chr6:10181522 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68665 PF07714 PK_Tyr_Ser-Thr 3.00E-46 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01635 Cma_Chr06 FPKM 23.672379 24.396162 25.4809 24.455387 19.888029 20.711369 17.546785 16.029434 15.188704 15.8523