Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01642 ATGGCAAACACAATGGCTAGATCTTTTCTGCAGGTCGCCGTCACGGAAGAGGTGGCTTCCCCTCTCCGAGTTGTTCAGATTGAAGGCTTGGTTATACTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCCTCCCTTGTGACTGGGCAACTTCTTGGATTAGATGTTGGTAGCGTTCTTGAAGTTACTAATTGCTTTCCCTTCCCGACACGAGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAGGTCAATGTTGACAATAACACTGTTGGATGGTACCAGTCAACCTTCTTAGGTTCATATCAGACTGTAGAGTTGATTGAGACCTTTATGAATTATCAGGAAAATATCAGGCGGTGTGTCTGCATTATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTCAAGGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCAGTAACAACTTTACAGGAGAGAAGTTGAGGGAGAAGAATTTCTCATGGGTTGATATTTTTGAGGAAATACCTATAAAAGTTTCAAATTCAGCCCTCATTAGTGCTTTTATGACTGAGCTTGAAGCTGACTCTCCAGTAACCCAGTGTGATTATGACCGCCTACAACTTTCAACTAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCGGTGGAGCAGCAGAAGTTTCAATTCTATTATCGGAGTCTTACCCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCTGAGAACATGGCGAGGAAGGCAGCAGGAGAAGAACCTCTCCCTGAGGAGGATCCTGCGAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACCAATCAAATAGGAAACTACTGCAACCAAATCAATGGGGTTGCGGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTTTGCATGACAATTAA 1014 43.49 MANTMARSFLQVAVTEEVASPLRVVQIEGLVILKIIKHCKEFSPSLVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNFSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPANPIFKPLPEPSRLDSYLITNQIGNYCNQINGVAGQSFNRLHLMKALHDN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10206666 10210367 - CmaCh06G016420.1 Cma06g01642 297196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01642 337 MobiDBLite consensus disorder prediction 274 294 - -
Cma06g01642 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma06g01642 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743|GO:0005737|GO:0005852
Cma06g01642 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Cma06g01642 337 Pfam C-terminal region of eIF3h 143 335 IPR045810 -
Cma06g01642 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743|GO:0005737|GO:0005852
Cma06g01642 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 337 - -
Cma06g01642 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 3 337 - -
Cma06g01642 337 SMART pad1_6 24 157 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma06g01642 337 Gene3D Cytidine Deaminase, domain 2 2 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01642 Cma-Chr6:10206666 Cma14g00076 Cma-Chr14:359521 3.48E-07 dispersed
Cma14g01480 Cma-Chr14:11250182 Cma06g01642 Cma-Chr6:10206666 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01642 K03247 - csv:101211860 655.595