Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01648 ATGAGTGGTTGGAGAGGTGGATTGTTTGTGGAATTGGTTGTTTTTGCAGATATGTGTCTGATGGTGTCTGGTTTAGGCTCTATGGCTTCTGTGGCTGTTTCTTATGGCGAGAAAGGGCCTGTTTTCTGTGGTTTAATGGCAGATGGGTCTCATCTTGTGAGCTGTTTTGGTTCAAATTCAGCCATAACTTACGGAACTCCTTCTCATTTCCCCTTCATTGGTCTCACTGCTGGTGATGGTTTTGTTTGTGGGCTTCTTTTGGATTCCAACCAGCCTTACTGTTGGGGAAGCAGTGGCTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGCCGCTCGATACCAGGAAATCAGTGCTGGTGATTACCATCTCTGTGGCCTCCGAGCACCGCTAACTGGAAGGCATAGGAACAACACGTCTTTTGTTGATTGTTGGGGCTACAACATGACGAGAACCTTTGTGTTCGATGGCCCGATTGAATCGATCTCGGCAGGGTCTGAGTTCAACTGTGGGCTGTTTTCTCTTAATAGAACTGTTTTGTGTTGGGGCGATGAGACGAGCAGCCGGGTCATCAGTTTGATACCTAAAGATATGAGGTTTCTAAAGATTGCTGCTGGTGGATATCATGTTTGTGGGATTCTAGAGGGCGCTAAGGCGAGGGCGTTCTGTTGGGGAAGGAGCTTAGACATTGAAGGAAGTGCAGACTTGGTTCCAATTGATCCATTAGACTCTGTTGTTGGGGGCAAGTTTCATGCTTGTGGGATCAAGAGCATGGACCGTGGTGTGATTTGTTGGGGCTTTACAGTCAAACCAAGCACTCCAGCACCGGATGGGATTAAAGTTTATGACATAGCAGCTGGAGATTACTTCACTTGTGGAATTCTAGCTGAGAAATCTCTCCTGCCTGTTTGCTGGGGTCTTGGATTTCCTAATTCTATACCCTTAGCTGTGTCGCCTGGAGTCTGTAAAGCAACTCCTTGTGCTCCTGGTTTCTTTGAACTAAGCCAAGACAGTGCTCGGTGCAAGTCACCGAGTTTTCGTGTGTGTATGCCCTGCAGTACTACATGCCCTCCTGAGATGTACCAAAAATTTGAATGCTCCTTAAAATCTGATAGACAATGTGAATATAACTGTTCACGTTGTTTTTCTTTCGAGTGTTCATCAAACTGTTCATCCATTAGTTCAAATGGTTTGATGGGGAAGAAAAATGAGAAGTTGTGGTCAATGCAGCTTCCAGCTCTGGTAGCAGAGGTTGCTTTTGCTCTGTTTTTGGTAGCTATTGTGTCGTTAACTGCGATCTTATACGTTCGGTATAAGTTACGGAGCTTCCATTGTTCGGAAAAGGAGTTGAAGTCTAAGAAGAACCAAGGGACTGCCTCTTCCTTCCAGAAGGAAAGCTACAAAATACGTCCTGACTTAGATGAGCTAAAGATAATGAGGGCTCGGATGTTCACTTACGAAGAGCTCGTGGGAGCGACGTGCGGGTTTAAGGAAGATTCAATGGTGGGAAAGGGAAGTTTCTCCTGTGTTTTCCGAGGTGTTTTAAACAACGGGACGGTTGTAGCAGTGAAACGAGCTATAATGTCTCACAACAAGCAGAAGAATGCAAAAGAGTTTCACACTGAACTTGACTTATTGTCAAGATTAAACCATGCTCATTTGCTTAATCTACTTGGTTATTGTGAAGAAAGTGGAGAGAGGCTTCTAGTTTATGAGTTCATGGCTCATGGTTCCTTATATCAGCATCTTCATGGCAAGAACAAGGCCTTGAAAGAGCAACTAGATTGGATAAGAAGGGTCACCATTGCAGTCCAAGCAGCAAGGGGAATTGAATACTTGCATGGCTATGCTTGTCCTCCCGTCATCCATCGGGACATCAAATCGTCAAACATTCTTATTGACGAGGAGCATAACGCTCGAGTAGCCGATTTTGGCTTGTCGTTGTTGGGGCCAGCGGATGGTAGCTCTCCATTAGCGGAGCTACCAGCGGGAACTCTTGGCTATCTTGATCCTGAATACTACAGACTTCACTACCTTACAACCAAGTCTGATGTCTATAGCTTTGGTGTTTTGCTACTCGAAATTCTCAGCGGTAGAAGAGCCATTGATATGCAGTATGAAGAAGGGAACATAGTAGAATGGGCAGTGCCGTTGATCAAATCTGGAGATATCTCTGCAGTTTTAGATCCGATACTAAAACCGCCATCCGATATCGAGGCCTTGAAGAAGATAGCAAACGTAGCTTGTACATGTGTGAGAATGAGGGCGAAGGAGAGGCCATCAATGGACAAAGTCACGACGGCATTGGAACGTGCTCTTGCCCAGTTAATGGGAAGTCCATATAATGAACAACCAATCTTACCAACGGAGGTGGTTTTAGGAAGCAGTAGACTGCATAAAAAGTCATCTCAAAGATCATTGAACCATTCCGTCTCCGAAACGGATATAGCAGAATCTGAGGATCAAAGGTTCGAGTTCAGAGCTCTGTCGTGGATTACATTCCCGAGCGTGACATCGTCCCAGCGGAGGAAATCCTCAGCTTCAGAAGCAGATGTTGATGGAAAGAATTTAGAAGGAAGAAATGGGGATGGATTGAAGAGTTTAGAGGAAGAGATTGAGCCTGCTTCCCCTCAGGAAAAGCTGTTCTTGGAGCACAATTTCTAA 2667 45.26 MSGWRGGLFVELVVFADMCLMVSGLGSMASVAVSYGEKGPVFCGLMADGSHLVSCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKAARYQEISAGDYHLCGLRAPLTGRHRNNTSFVDCWGYNMTRTFVFDGPIESISAGSEFNCGLFSLNRTVLCWGDETSSRVISLIPKDMRFLKIAAGGYHVCGILEGAKARAFCWGRSLDIEGSADLVPIDPLDSVVGGKFHACGIKSMDRGVICWGFTVKPSTPAPDGIKVYDIAAGDYFTCGILAEKSLLPVCWGLGFPNSIPLAVSPGVCKATPCAPGFFELSQDSARCKSPSFRVCMPCSTTCPPEMYQKFECSLKSDRQCEYNCSRCFSFECSSNCSSISSNGLMGKKNEKLWSMQLPALVAEVAFALFLVAIVSLTAILYVRYKLRSFHCSEKELKSKKNQGTASSFQKESYKIRPDLDELKIMRARMFTYEELVGATCGFKEDSMVGKGSFSCVFRGVLNNGTVVAVKRAIMSHNKQKNAKEFHTELDLLSRLNHAHLLNLLGYCEESGERLLVYEFMAHGSLYQHLHGKNKALKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADGSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRRAIDMQYEEGNIVEWAVPLIKSGDISAVLDPILKPPSDIEALKKIANVACTCVRMRAKERPSMDKVTTALERALAQLMGSPYNEQPILPTEVVLGSSRLHKKSSQRSLNHSVSETDIAESEDQRFEFRALSWITFPSVTSSQRRKSSASEADVDGKNLEGRNGDGLKSLEEEIEPASPQEKLFLEHNF 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10224990 10227656 + CmaCh06G016480.1 Cma06g01648 297202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01648 888 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Cma06g01648 888 Gene3D Transferase(Phosphotransferase) domain 1 575 783 - -
Cma06g01648 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Cma06g01648 888 ProSiteProfiles Protein kinase domain profile. 497 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01648 888 MobiDBLite consensus disorder prediction 847 888 - -
Cma06g01648 888 Gene3D - 150 322 IPR009091 -
Cma06g01648 888 SUPERFAMILY Protein kinase-like (PK-like) 478 770 IPR011009 -
Cma06g01648 888 MobiDBLite consensus disorder prediction 841 888 - -
Cma06g01648 888 Pfam Protein kinase domain 498 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01648 888 Gene3D - 24 149 IPR009091 -
Cma06g01648 888 PANTHER RECEPTOR-LIKE KINASE 8 888 - -
Cma06g01648 888 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 8 888 - -
Cma06g01648 888 SMART serkin_6 497 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01648 888 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 327 375 IPR001368 GO:0005515
Cma06g01648 888 CDD STKc_IRAK 503 772 - -
Cma06g01648 888 Gene3D Phosphorylase Kinase; domain 1 467 574 - -
Cma06g01648 888 SUPERFAMILY RCC1/BLIP-II 26 268 IPR009091 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01648 Cma14g01475 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01292 Cma-Chr3:8394317 Cma06g01648 Cma-Chr6:10224990 3.50E-46 dispersed
Cma06g01648 Cma-Chr6:10224990 Cma07g00930 Cma-Chr7:4466956 7.41E-111 dispersed
Cma14g01475 Cma-Chr14:11222094 Cma06g01648 Cma-Chr6:10224990 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68667 PF00069 Pkinase 8.10E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01648 - - csv:101210393 1585.08