Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01650 ATGGTTGGTATTTCTCGTGATTCTATGCACGAGAGGCGTGCCATTGGAGGAAAGAAGAAGGCTTGGAGTATGAGCTCGGAAGGCAACCTGCCAACACTAAGTTGTCCAGTGACAAGTCGATTTGAAGGATCAGAGTTCGTGGTGGTAATTTGCGTGGAGCTCGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGTGACGAGAAAGACCCGTATTCTCGATGTGGTGTACAACGCATCTAACAACGAGCTTGTTCGTACTCAAACCTTGGTTGATGCAGCACCATTCAAACAGTGGTACCTTCAGCATCTAACAACGACCTCAGCAGCTGCTAAGAAGGCCAAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATGTCCAGCGAAAGCTAGAGAAACGTCAGCAGGATCGTAAGCTTGAGCCTCATATTGAAGAACAATTCAGCGGTGGTTGTTTGATGGCCTGTATCTCATCAAGACCGGGTCAATGCGGTCGAGGCGATGGAGGGCAAAGAGCTCGAGTTCCACATGAAGAAACTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCTTAAGTCAGTGTATCATTGAGATGTTTTCTCCCATTTCAGTAGCCATTTCTTCAACCGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTGGGGAATGGTCGAACCGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTGGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACCCGTCTCAACGAGGGTATTGCTGGAGGTATCGATGATGAGGATGATGGCGGTGCTGATGACTATCTTGAGTTCGAGGATGAAGATATCGACAAAATTTAG 1230 47.97 MVGISRDSMHERRAIGGKKKAWSMSSEGNLPTLSCPVTSRFEGSEFVVVICVELDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVDAAPFKQWYLQHLTTTSAAAKKAKEGDAPSEEATKSNHVQRKLEKRQQDRKLEPHIEEQFSGGCLMACISSRPGQCGRGDGGQRARVPHEETSKEEGKRSWCCLSQCIIEMFSPISVAISSTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10230904 10235902 - CmaCh06G016500.1 Cma06g01650 297204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01650 409 MobiDBLite consensus disorder prediction 111 146 - -
Cma06g01650 409 Pfam Ribosomal protein S8e 7 172 IPR022309 -
Cma06g01650 409 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 216 265 - -
Cma06g01650 409 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 265 409 - -
Cma06g01650 409 MobiDBLite consensus disorder prediction 256 288 - -
Cma06g01650 409 CDD S1_IF1A 297 373 IPR001253 GO:0003743|GO:0006413
Cma06g01650 409 PANTHER EIF-1A 216 265 IPR001253 GO:0003743|GO:0006413
Cma06g01650 409 MobiDBLite consensus disorder prediction 1 18 - -
Cma06g01650 409 ProSitePatterns Eukaryotic initiation factor 1A signature. 305 327 IPR018104 GO:0003743|GO:0006413
Cma06g01650 409 Gene3D - 217 265 IPR012340 -
Cma06g01650 409 Gene3D - 266 409 IPR012340 -
Cma06g01650 409 ProSiteProfiles S1 domain IF1 type profile. 286 360 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cma06g01650 409 SUPERFAMILY Nucleic acid-binding proteins 266 408 IPR012340 -
Cma06g01650 409 MobiDBLite consensus disorder prediction 1 26 - -
Cma06g01650 409 CDD Ribosomal_S8e_like 6 172 - -
Cma06g01650 409 Gene3D - 1 177 - -
Cma06g01650 409 Hamap Translation initiation factor 1A [eif1a]. 280 374 IPR001253 GO:0003743|GO:0006413
Cma06g01650 409 MobiDBLite consensus disorder prediction 166 186 - -
Cma06g01650 409 SUPERFAMILY Nucleic acid-binding proteins 217 263 IPR012340 -
Cma06g01650 409 MobiDBLite consensus disorder prediction 115 146 - -
Cma06g01650 409 Gene3D Ribosomal protein S8e, subdomain 95 151 IPR042563 -
Cma06g01650 409 MobiDBLite consensus disorder prediction 211 242 - -
Cma06g01650 409 SMART eIF1neu4 292 374 IPR001253 GO:0003743|GO:0006413
Cma06g01650 409 TIGRFAM eIF-1A: translation initiation factor eIF-1A 278 374 IPR001253 GO:0003743|GO:0006413
Cma06g01650 409 MobiDBLite consensus disorder prediction 228 242 - -
Cma06g01650 409 Pfam Translation initiation factor 1A / IF-1 296 357 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cma06g01650 409 PANTHER EIF-1A 265 409 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01650 Cma-Chr6:10230904 Cma20g00565 Cma-Chr20:2727793 4.09E-99 dispersed
Cma06g01650 Cma-Chr6:10230904 Cma06g01652 Cma-Chr6:10242422 2.87E-24 proximal
Cma14g01472 Cma-Chr14:11209627 Cma06g01650 Cma-Chr6:10230904 4.14E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01650 K03236 - ini:109155805 265.003