Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01659 ATGAGAGCACCATCATTACTTGCGCAATGCTTGCCTGGTTTGGTGCCCCAAGATAAAGGAAGCCAGAGCAGTCCCTCCATTTCAGAGAGAGATGTCCATCTCCCCTCACCAGCTGTGGAGATTCTCCCTTCAAAGACAGCTCATCCCTACAAATATGCAGGGGAGAACGTCGATTTGCAAGGTCTCAATGTCTTTAAGGGTAGAGTTAGTGTTGCTGATATAATTGGCTTCAATGGATCAGAGTCTATATCTTCAAAGCCTGAAGGCTATCTGAAATCTTGGGACAGTTCCATTGATCTTGTTAATGTCCTTAAGCATGAGATTCGCGACGGACAACTGAGCTTTAGGGGCAAAAGAGTTCTTGAGCTGGGTTGTAGCTATGGACTTCCTGGAGTTTTTGCTTGCCTCAAGGGAGCAAGCATAGTGCACTTTCAAGACCTGAGTGCAGAAAGTGTTAGATGCACAACCATACCGAACGTCCTTGCGAATCTCGAACAAGCTCGGGACAGGCAGAGTAGACAGCCGGAGAGTCCCTTAACTCCGTCCAGACACAGTTTGAGCCCATCGGTACATTTTTACGCGGGCGATTGGGAAGAGCTCCCAACAGTGTTATCCGTTGTTAGGGGTGATGGATTTGAAGGACCAACTGGAATGAGCTTGAGCTTCTCTGAAGAAGATTTTATGGATGGTTGCAGCAGTCAAGATGGTAGCATCATTGGGCATGAGTCTTCCTCAAGGAGATCGAGGAAACTATCGGGAAGTCGAGCATGGGAGAGGGCGAGTGAGAGCGATCAGGGAGAAGGTGGATACGATGTGATTTTAATGGCGGAAATCCCATATTCACTTAACTCTTTGAAGAAACTATACAGTCTTATAAAGAAGTGTGTGAGGCCACCATATGGAGTGTTATACTTGGCGACCAAGAAGAATTACGTCGGTTTCAATAGCGGAGCGAGGCATTTGAGGAGTTTGGTCGACGAGGAAGGCGTTTTTGGAGCTCACTTGGTGAAGGAGATGACTGACAGAGACATTTGGAAGTTCTTTCTCAAGTGA 1053 47.01 MRAPSLLAQCLPGLVPQDKGSQSSPSISERDVHLPSPAVEILPSKTAHPYKYAGENVDLQGLNVFKGRVSVADIIGFNGSESISSKPEGYLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCSYGLPGVFACLKGASIVHFQDLSAESVRCTTIPNVLANLEQARDRQSRQPESPLTPSRHSLSPSVHFYAGDWEELPTVLSVVRGDGFEGPTGMSLSFSEEDFMDGCSSQDGSIIGHESSSRRSRKLSGSRAWERASESDQGEGGYDVILMAEIPYSLNSLKKLYSLIKKCVRPPYGVLYLATKKNYVGFNSGARHLRSLVDEEGVFGAHLVKEMTDRDIWKFFLK 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10259874 10263715 - CmaCh06G016590.1 Cma06g01659 297213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01659 350 Gene3D Vaccinia Virus protein VP39 77 328 IPR029063 -
Cma06g01659 350 MobiDBLite consensus disorder prediction 166 187 - -
Cma06g01659 350 MobiDBLite consensus disorder prediction 242 262 - -
Cma06g01659 350 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 308 IPR029063 -
Cma06g01659 350 MobiDBLite consensus disorder prediction 237 262 - -
Cma06g01659 350 PANTHER OS09G0514300 PROTEIN 1 346 - -
Cma06g01659 350 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 1 346 IPR019410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01659 - - - csv:101212594 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01651 Cma-Chr6:10238872 Cma06g01659 Cma-Chr6:10259874 3.40E-156 dispersed
Cma06g01653 Cma-Chr6:10249230 Cma06g01659 Cma-Chr6:10259874 2.17E-171 proximal
Cma14g01544 Cma-Chr14:11651397 Cma06g01659 Cma-Chr6:10259874 1.06E-63 transposed
Cma14g01468 Cma-Chr14:11181982 Cma06g01659 Cma-Chr6:10259874 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1022 . . . . . . . . . . Cma06g01659 . Car06g01402 Car14g01361 . . . . . . . . . . . . . . . . . . . Cone18ag0915 Cone11ag0592 . . . . . Blo07g00063 . . . . . Bma06g01395 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005791 1 3 0 1 1 1 2 1 1 1 1 1 4 1 1 2 1 2 3 1 1 1 1 1 1 0 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01659 Cma_Chr06 FPKM 15.30317 16.388174 12.727607 13.704197 7.769248 7.832511 7.229064 15.393934 14.152011 14.573771