Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01664 ATGGGAAGTGGTTTCTTTAGCGAATCTGAATTGTGGGTGAATGGAGTTCGAGAAGACCTAGAGGAGGATACCTCCATTGAAGAGGGTGAGGAAATCGGGTCGGATTCGGATTTGGACGAGTCGGTTCAAATGGGGATGGAAAATTTGACGAAGAAGATGAAGAAGAAGAAGAAGAATCATGTTTTGCTTGAGGGGTTTGTGGAGGATGAGGATGAGTTGATGAGGACGAAGAGCTTGACGGATGAGGATCTGGATGAGCTTAAAGGGTGTGTGGATCTAGGGTTTGGTTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGTTGGAGCTCTGTTATTCCATGAGCCAAAAGTACATGGACGAGCACCAGAAGTCGCCGGAGAGCTCGACGGCGTTGGATTCGTGTTCGTCAGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTGATCATCCAGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGATTATGCAACTAA 543 48.07 MGSGFFSESELWVNGVREDLEEDTSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKKKNHVLLEGFVEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDEHQKSPESSTALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACTVRLCN 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10283073 10284212 - CmaCh06G016640.1 Cma06g01664 297218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01664 180 MobiDBLite consensus disorder prediction 21 37 - -
Cma06g01664 180 Pfam Protein of unknown function (DUF1685) 79 134 IPR012881 -
Cma06g01664 180 PANTHER OSJNBA0071G03.3 PROTEIN 17 180 - -
Cma06g01664 180 MobiDBLite consensus disorder prediction 17 39 - -
Cma06g01664 180 PANTHER EXPRESSED PROTEIN 17 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01664 - - - csv:101213317 276.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00980 Cma-Chr3:6920651 Cma06g01664 Cma-Chr6:10283073 9.25E-24 dispersed
Cma06g01664 Cma-Chr6:10283073 Cma17g00595 Cma-Chr17:4937841 1.02E-68 dispersed
Cma14g01465 Cma-Chr14:11151801 Cma06g01664 Cma-Chr6:10283073 4.98E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1148 . . . . . . . . . . Cma06g01664 . Car06g01406 . . . . Bhi01g02696 . . . . . . . . . . . . . . . . . . . . . . Blo07g00189 . . . . . . . Cmo06g01658 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1193 . . . . . . . . . . Cma06g01664 . Car06g01406 Car14g01297 . Cpe08g00077 Cpe03g01232 . . . . . . . . . . . . . . Cone14ag0576 . . Cone11ag0614 . . . Cme07g01904 . Blo07g00090 . . . . . Bma06g01421 . Cmo06g01658 . . . Car08g00063 . . Cpe17g00989 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001176 2 2 2 2 2 2 5 2 2 2 1 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01664 Cma_Chr06 FPKM 16.155993 14.826786 37.745701 32.594742 37.076023 37.127914 31.433401 11.493705 15.868039 13.442289