Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01672 ATGATGGAAAGTTACCCAGATTTTCTCTCAGCTTCATCGTCTTCAAACTCCCTCTCTTTCCAGAAAACGCTGATTTCTCGAGCTTCCGAGCCCACCGGAATCCATGGAAGTCATTTCCGGGAGGCGGGCATCTCCGGTGGGTTTCCGTTGTTTCCCGACGTGTCGAGGAGCTACATGTCTGTGGATACGAGAAGTAGTATGAAGGAAGATATGGTTTCGGTTAGTAAAGGCTTCCATGCTGATGGGTCAGCGGGGGAGGTGGTGGAGGGAGGAGCGGAGACGACGGAGATGGCGGCGGCGAGACAGGGAGATAATGATAAGAAAAAGAAGACGAGAAGCCGGAGATTTGCTTTTCAAACAAGGAGTCAAGTTGATATTCTTGATGATGGATATCGATGGAGGAAGTACGGACAGAAGGGTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAAATGCACACACCAAGGGTGCAAGGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGAGTGGTGGTGACAACTTATGAAGGCATTCACTCTCATCCCATTCAGAAATCCACGGATAACTTCGAGCATATTTTGACCCAGATGCAAATTTACACTTCTTATTGA 621 47.34 MMESYPDFLSASSSSNSLSFQKTLISRASEPTGIHGSHFREAGISGGFPLFPDVSRSYMSVDTRSSMKEDMVSVSKGFHADGSAGEVVEGGAETTEMAAARQGDNDKKKKTRSRRFAFQTRSQVDILDDGYRWRKYGQKGVKNNKFPRSYYKCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIQKSTDNFEHILTQMQIYTSY 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10315006 10316678 - CmaCh06G016720.1 Cma06g01672 297226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01672 206 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 203 IPR044810 GO:0003700
Cma06g01672 206 ProSiteProfiles WRKY domain profile. 122 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01672 206 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 76 203 - -
Cma06g01672 206 Gene3D WRKY domain 111 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g01672 206 Pfam WRKY DNA -binding domain 128 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01672 206 SMART WRKY_cls 127 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01672 206 SUPERFAMILY WRKY DNA-binding domain 119 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00723 Cma-Chr4:3680441 Cma06g01672 Cma-Chr6:10315006 6.05E-38 dispersed
Cma06g01672 Cma-Chr6:10315006 Cma11g01514 Cma-Chr11:9902931 1.55E-54 dispersed
Cma06g01672 Cma-Chr6:10315006 Cma14g00727 Cma-Chr14:3641445 2.48E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35298 PF03106 WRKY 4.90E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01672 - - cmo:103494564 255.373