Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01683 ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAGTTCCCGGCAGAAGTGGTGGAGGTAGAAACAATGATGGAACAGAAAAGTAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGCGACGCAAGGCAGATTTTTCCATCTCCGCTAAGGAAAAGAAAGACAAACTGGGCGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATTCGGAAAGACAGATACGGCATCTGTTCTTCTTGAGGCCATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTATTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGATGGAGTTGCCATACAACCACGGGCTGAGGAACAAAGGTTTATGTCTTGTACCCATCTCTTGTACTGCAGGAGTTGCACGTAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGACCATCTCACCATTCAATTGA 507 45.96 MIASSLCNASAKFPAEVVEVETMMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKTISPFN 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10371365 10375138 - CmaCh06G016830.1 Cma06g01683 297237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01683 168 Gene3D - 41 117 IPR036638 GO:0046983
Cma06g01683 168 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 17 152 - -
Cma06g01683 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Cma06g01683 168 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 152 - -
Cma06g01683 168 CDD bHLH_AtbHLH_like 51 102 IPR045239 -
Cma06g01683 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 109 IPR036638 GO:0046983
Cma06g01683 168 SMART finulus 53 100 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01683 Cma-Chr6:10371365 Cma11g00623 Cma-Chr11:2998384 3.42E-33 dispersed
Cma14g01438 Cma-Chr14:11018138 Cma06g01683 Cma-Chr6:10371365 2.64E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01683 - - cmax:111470730 330.487