Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01692 AAGGATGATAGGAGAAATGAAAGGAAGGGAAATGGGAAAGGAGAGTCTACTTCTTCCTTCATTCCGATCTTTAGAAAGCCGAGCAGTGTCGAGAAAATCTTTAGTGATTTCGAGAGGGAGCAACGAATAGTAGCTTTTCAGCCTCCCACTCCTGAACTACCATCCACACCACCCCATGTACCTCCTCGACCAGCTTCCCCACCGGCCCCTTCCCCTCCTAGAGCTCCTCCTGCTAACGAATCATCTCCCAAGATTTCTCCTCCTCGAGTTGCTTCTCCTCCCCGAGTTTGCTCATCAACAGTTGCCAATCATCACGAGGAAGTCCGCGACGTTCCAATAGTCATCAATGATCACGAGGAAGCCAGAGACATTCCATCGGTTGTCAATCATCACGAGGAAGTCAGCAACATTCCAGCAGTCGTCAATCATCATCTCGAGGAATTCAGCAACATTCCAGCAGTCGTCAATCATCATTGCGAGGAAGTCAGCTACGTTCCAGAACCAACATCAAACCATCTTTCTTCGGCCATTAAGATCCAAGCAACCTACAGAGGCTATGTGGCAAGGAAAAGCTTCAGAGCATTGAAGTGTCTGGTGCGGCTTCAAGGCATTGTACGAGGAAATAACGTGAGGCGACAGACTTTGAATGCAAAGAAACAGATGCAGCTGTTGGTTCGGGTGCAGTCTCAGATACAATCACGACGGATCGAAATGATAGAAAACCAGAGGCAACTCCAGGATCATCACAACGATAAAGAAGCTCACAGTACCTTCGATGCATCTGAGGGAGGTAACCATGAAAATTGGGATGAAAGCTCACTAACAAAGGAGGAAAAGGATGCCCGATTGCAGAGGAAGGTCGAAGCCACCATTAAACGAGAACGAGCGAGGGCATATGCATACTCCCAATCCCACCAGAGAACTACTCCAAGGTTTGGGCAAGATGCTCAAATGGGTACATGCTCCATGGGAGTTCCTAGGTGGTTGAAATGGTTAGAAGGCCAGTTACCTACCGAAGCTCCTCCGAAACATCCTCTACCGAGACCTGTAACTCCACAGTTGGAGCAGAAGTCGAGCCCGCGAACTCCATCAAGCAACAACAGACGACCGAGTTTCGGCTTAGATGGTAGGGATACGCCCACACCGAAGTCTACAAAAGCAACACCATTCTCGAATTCAAGGCCTGCTTGGTCTCCGCATTGGTCGAGAACCCCTCCAACAGCTAGGTCGAACGTCTCCAGCGATTCGAGATCACGAGGCAGACGAGTATTATCTCCTTTTGAAATGAGGTTAAAGGATGATGACAGCCTTGTAAGCTGCCCTCCATATATGGCACCACATTACATGACTCCGACGATTTCAGCCAAAGCGAAAGTACGAGCGCATAGCAACCCAAGGGAGAGGTTTCCAGGTACACCAAGGAGCGAAGCATCAAGCAGGAGGCAGTCGTTTCCGCCGACTCAAGGTGTTGGATCGTTTAGGAACAGAGGTTTGATGTCACCGAGGACGGAGCATGCAGCTTTAGACGACAACCAATCTTTACGATCAGTCGGCTTCAGCATCGCCTCGACACCAACTGGAAATAGAAGGAAGCCATTTAACAGATTTGTGTGA 1614 49.13 KDDRRNERKGNGKGESTSSFIPIFRKPSSVEKIFSDFEREQRIVAFQPPTPELPSTPPHVPPRPASPPAPSPPRAPPANESSPKISPPRVASPPRVCSSTVANHHEEVRDVPIVINDHEEARDIPSVVNHHEEVSNIPAVVNHHLEEFSNIPAVVNHHCEEVSYVPEPTSNHLSSAIKIQATYRGYVARKSFRALKCLVRLQGIVRGNNVRRQTLNAKKQMQLLVRVQSQIQSRRIEMIENQRQLQDHHNDKEAHSTFDASEGGNHENWDESSLTKEEKDARLQRKVEATIKRERARAYAYSQSHQRTTPRFGQDAQMGTCSMGVPRWLKWLEGQLPTEAPPKHPLPRPVTPQLEQKSSPRTPSSNNRRPSFGLDGRDTPTPKSTKATPFSNSRPAWSPHWSRTPPTARSNVSSDSRSRGRRVLSPFEMRLKDDDSLVSCPPYMAPHYMTPTISAKAKVRAHSNPRERFPGTPRSEASSRRQSFPPTQGVGSFRNRGLMSPRTEHAALDDNQSLRSVGFSIASTPTGNRRKPFNRFV 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10407698 10409967 - CmaCh06G016920.1 Cma06g01692 297246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01692 537 MobiDBLite consensus disorder prediction 475 494 - -
Cma06g01692 537 MobiDBLite consensus disorder prediction 352 372 - -
Cma06g01692 537 Pfam Protein of unknown function (DUF4005) 408 515 IPR025064 -
Cma06g01692 537 MobiDBLite consensus disorder prediction 1 25 - -
Cma06g01692 537 MobiDBLite consensus disorder prediction 242 283 - -
Cma06g01692 537 SMART iq_5 171 193 IPR000048 GO:0005515
Cma06g01692 537 MobiDBLite consensus disorder prediction 337 427 - -
Cma06g01692 537 PANTHER IQ-DOMAIN 5-RELATED 10 534 - -
Cma06g01692 537 MobiDBLite consensus disorder prediction 296 318 - -
Cma06g01692 537 MobiDBLite consensus disorder prediction 50 90 - -
Cma06g01692 537 MobiDBLite consensus disorder prediction 381 420 - -
Cma06g01692 537 Pfam IQ calmodulin-binding motif 174 193 IPR000048 GO:0005515
Cma06g01692 537 MobiDBLite consensus disorder prediction 41 103 - -
Cma06g01692 537 ProSiteProfiles IQ motif profile. 172 200 IPR000048 GO:0005515
Cma06g01692 537 MobiDBLite consensus disorder prediction 301 316 - -
Cma06g01692 537 Gene3D - 173 233 - -
Cma06g01692 537 MobiDBLite consensus disorder prediction 462 497 - -
Cma06g01692 537 PANTHER IQ-DOMAIN 13 10 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01692 - - - csv:101221582 731.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01692 Cma-Chr6:10407698 Cma08g00183 Cma-Chr8:1030926 1.06E-92 dispersed
Cma14g01431 Cma-Chr14:10987404 Cma06g01692 Cma-Chr6:10407698 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1327 . Blo12g00275 Bda03g00960 . Bpe04g00888 Bpe14g00792 Bma04g00856 . Cmo08g00188 . Cma06g01692 . . . . . . Bhi01g03674 Tan10g1432 . . . . . Cla06g00104 Cam06g0111 Cec06g0116 Cco06g0115 Clacu06g0117 Cmu06g0115 Cre06g0885 Cone14ag0616 Cone15ag0623 . Cone11ag0674 . . . Cme07g01945 . . . Bda13g00537 . . . . Sed07g0076 . . . . Car08g00167 . . Cpe17g01077 Bhi12g02466 Tan06g1528 Cmetu11g0606 . . . . . . . . . . . . . . Cme11g02434
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004543 2 4 0 2 2 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 0 4 5 0 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01692 Cma_Chr06 FPKM 73.945198 77.026695 55.207905 52.220989 41.027485 44.288269 37.689423 76.065605 76.060417 64.157509