Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01698 ATGAAGAACACTGGCATTAACACTCTCGGCGGCGAAGATCGACAAACAAAAGACAATACGATCTCAGGCCTCGATTCCCGATTCAATCAGACCCTCAGAAATGTTCAAGGGCTGCTGAAAGGCCGCAGTATTCCTGGAAAAGTATTGCTCACTAGAAGATCAGACGTGATCGACCCCTCGAGCGTATCAGAAAAATCATCAAATTATTTGAGGAGCTTGTCGCATAATGATATTGGTACAAGCAACCGCATTGCCAAATCTGAGGAGGAAGATATTCAGATTATGAATAATAATACAATTGTTAGTAAGTCTAAATCTTCAACCTCCAACACCGAGGATCTTGCTAAAGAAGTCCAAAAGCCAATAATGGGTGCTAGAGCAACAGATTCTGCAAGGGTCCTGAAGTTCACAAAGTTGCTATCAGGAACAACAATCATATCAGACAAGTTGCGTGAGCTAGCTTGGAGTGGCGTTCCGCCATATATGCGCCCAAATATATGGAGACTTCTTTTGGGCTATGCACCACCTAATTCAGATAGAAAGGAGGGAGTTCTACGAAGAAAGAGGCTTGAATATCTTGACAGCGTTGCACAATTCTATGACATTCCTGATACTGAACGGTCTGACGATGAGATAAACATGCTCCGCCAGATTGCTGTTGATTGCCCTAGAACCGTACCTGATGTTACTTTCTTTCAACAAGCACAAGTTCAGAAATCCTTGGAGCGTATTCTCTATACTTGGGCTATTCGACATCCTGCGAGCGGATACGTTCAAGGAATAAATGATCTTGCTACTCCATTTTTAGTTGTCTTCTTGTCAGAATACTTAGAAGGTGGTGTTGAGAAATGGTCTATCTCCGATCTATCTCCTGACAAGATCACAAACATTGAGGCAGATTGCTACTGGTGTCTATCCAAATTACTTGATGGTATGCAAGATCATTATACGTTTGCACAACCGGGAATTCAGCGGCTTGTATTTAAGTTGAAGGAACTGGTTAGGAGGATTGATGAACCTGTTTCAAGACACATGGAGGAGCAGGGTCTGGAGTTTCTTCAATTCGCTTTTAGGTGGTTCAACTGTCTTCTGATACGGGAGATTCCTTTCCATCTTGTTACCCGGTTATGGGATACTTATCTTGCGGAAGGGGACTCATTGCCAGATTTCCTTGTCTACATATTTGCCAGTTTTCTGTTGACGTGGTCTGAAGAGCTGCAGAAACTTGATTTCCAAGAATTGGTGATGTTTCTCCAGCATGTTCCAACTCAAAATTGGACCCATCAAGAACTTGAGATGGTGCTTTCAAGAGCATACATATGGCACAAGCAAAGTAAAGTTAAACGTTTTTGTTCAGATATAAATGAAATTCTCCGTCAAGAAGTAGATAGACCAAGCTTAGATACTTCAAAAATATCCGAGCTGATGGAAACGAATTCAAATATAAAAGGATTTACCTTTCTGATATTTTCCCGAGCTGGTGGAGTGGTGGGTGGTGGGTGGGAAGCGAGAAGGATAATGGGAATATCAGCCTCAAAACGAGTCAAGAACTCACTTTCGAACTCCCCCGATTTCGACTCAGCCTGCGATTCCACTTTCTCCCACTGCCTTGACCTAACGCAGCACGCATACGCCGGCGTTTTCCCCTACCAACTCTGCACCGCCGCCGACCACCTCCACCGTCTCCTCACCACCGTCCGCCCTCATCCACTCATTTCCAAGTGGCTTCCCTCTCCCCCGACTCGGCTGCAGGTCGACTCAGCCCTGCAAGCCGTCAATCGCGGAGACGCGGGTCGTGAAGACGAAGAAACCCTAGGACCGATCCGCTTCAAGCATTGGGCGATCGAGCTATTCGCAGAGGCTGTAGTGAAGAATGTCAGCAAAGAAGTGATGTTTCGAGTTCCGGTCGGAATAGCAGGAATCGCGGGAATCGGCGCCGTGACTAGGTCGGGAAAGGACCTGGTTGGGAGTATGGTTGCAGTGTACGCGCTTGGCGTTGCGACTTCGATGGTTGCTGTTGTAAGGATGGTTGAGCTTCTCTTTGATGATATCTTTAAGATCGAGCGATTAAACCCAGATGGCAAAAAGTTTGATAAAGTTACTCGAATAGAGGCAAAGAGCGAGAAGTTTGACATGTTCATGCATTTGGACATTAATACAGAAATATACAACTTGAAAGAAGGTGAGAAGTTTTCAATGGCACTGGCTCCAACTCTGAATCTTGATGGAACCCCTGACACAGGCTATTTTCTTCAGGGCAATAGGAAGTCACTTGCTGACAGATATGAATATGTCATGCACGGGAAGCTGTTCAGAATATCAGAAAGTTCTGGGCATGTCGGTAAAGCGGAAATAGATGCTTCTTTTGGTGGGCTTCTGATGATGCTGAAGGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGA 2460 45.24 MKNTGINTLGGEDRQTKDNTISGLDSRFNQTLRNVQGLLKGRSIPGKVLLTRRSDVIDPSSVSEKSSNYLRSLSHNDIGTSNRIAKSEEEDIQIMNNNTIVSKSKSSTSNTEDLAKEVQKPIMGARATDSARVLKFTKLLSGTTIISDKLRELAWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRKRLEYLDSVAQFYDIPDTERSDDEINMLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEELQKLDFQELVMFLQHVPTQNWTHQELEMVLSRAYIWHKQSKVKRFCSDINEILRQEVDRPSLDTSKISELMETNSNIKGFTFLIFSRAGGVVGGGWEARRIMGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLISKWLPSPPTRLQVDSALQAVNRGDAGREDEETLGPIRFKHWAIELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGSMVAVYALGVATSMVAVVRMVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMALAPTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHVGKAEIDASFGGLLMMLKGDPSHCSKFELDQRLFLLIRKV 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10434993 10442118 - CmaCh06G016980.1 Cma06g01698 297252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01698 819 Pfam RNA polymerase Rpb8 682 818 IPR005570 GO:0006351
Cma06g01698 819 Gene3D - 135 185 - -
Cma06g01698 819 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Cma06g01698 819 SMART tbc_4 154 410 IPR000195 -
Cma06g01698 819 Gene3D - 319 450 - -
Cma06g01698 819 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 11 443 - -
Cma06g01698 819 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 11 443 - -
Cma06g01698 819 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 444 IPR035969 -
Cma06g01698 819 MobiDBLite consensus disorder prediction 1 24 - -
Cma06g01698 819 Gene3D - 681 819 IPR012340 -
Cma06g01698 819 SUPERFAMILY Nucleic acid-binding proteins 679 818 IPR012340 -
Cma06g01698 819 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 136 344 IPR035969 -
Cma06g01698 819 SMART rpol8neu 677 818 IPR005570 GO:0006351
Cma06g01698 819 Pfam Rab-GTPase-TBC domain 162 405 IPR000195 -
Cma06g01698 819 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 196 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01698 K20360 TBC1D22, GYP1; TBC1 domain family member 2 - csv:101220794 819.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00795 Cma-Chr4:4074420 Cma06g01698 Cma-Chr6:10434993 1.11E-58 dispersed
Cma06g01698 Cma-Chr6:10434993 Cma16g00679 Cma-Chr16:3534806 7.00E-58 dispersed
Cma06g01698 Cma-Chr6:10434993 Cma06g01703 Cma-Chr6:10470066 2.39E-12 proximal
Cma14g01425 Cma-Chr14:10942629 Cma06g01698 Cma-Chr6:10434993 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g999 . Blo12g00111 Bda03g01130 . Bpe04g01073 . . . . . Cma06g01698 . Car06g01440 . . . . . . . . . . . . . . . . . . . . . . . Csa02g00896 . . . . . . . . . . . . . . . . Car17g00072 Cpe12g00072 . Bhi12g01464 . . . Hepe03g0386 . . . . . . . . . Lsi09g01112 . . .
Vvi5g1289 . Blo12g00266 Bda03g00971 . . . . . . . Cma06g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01952 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005593 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 5 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01698 Cma_Chr06 FPKM 15.178517 15.202909 26.041553 25.312672 35.902981 36.154881 35.1838 23.530359 23.203205 25.095711