Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01699 ATGGGTCAAACAAACCCGCTATTTCCCCTTGACCCGGATCCGAATGGGTCCAACAAAGGTAAAGTTTGTGCCTTTTTGCATTCATTTTGCCACTCCCCTCTCTCCCCTGTACCTACTCTCGCTTTTACAACTACAGGGAGCCGCTTCTGCTTGTTTAATTGCACGGTAAACGGAGTTGTTCAATGGGTTCTTCTTCTTCAGGTGGTATTGGCATATTTAATATGCTATAGAGCATTTTTCCACGAACTCAGCAAACTACAATTGGGAATTATTTTGCTTACATCATGTCCCCTGGAGGTTAATCGAATGATGGACTGCTTTCGTACTGTAAGTTATCCGAATGGTAATATGTGCCACCGATTACTATTGTTTGTCGTCTGGATATCCAGTTTTCATGATGGAGTTGTCTTATCTACTCTGGTACAGCATAGTCTTGTTTCGTCCACAAGAGAGCAGGCTCAGTCACCTAGTAGTGTTGTCTTTGATCCTATAGAGATATCACCTGCAGTTATCCCACAATACCCTTATCCCAATGATTCTTTGCCTCCAATGTATCCAACTTTTCCTACCAGATATGAACCAGTTTTAACTGGAAGATGCCCTGTAAATTTCTCTGTCATATCAAATGTTATGGACAAAACAGCATCAGATTGTTCTCAGCCCATGGCAGCACTTGTAGGAAATGTTATTTGCTGTCCACAACTAAGTAGCCTGCTCCATATCTTCCAGGGTTTCTATGGCTTAACCTCTGATCGGTTGGTTTTGCAAGAGGCAGTTGCTAATGATTGTTTTTCAGATATCATTAGCATCTTAGCCAGCAGAGGAGCTAATCAGACGATACCTTCTCTTTGCTCGGTCAAATCTTCAAATCTTACTGGTGGGTCATGTCCAGTCACAGACGTTGCAACGTTTGAAAAATCAGTTAATGTAAGCAAATTATTAGATGCATGCGATACAGTTGATCCTCTAAAGGAGTGTTGTAGACCGATATGTCAGCCTGCTATCATGGAAGCTGCACTTCAGATTTCTGGAAGGCAATTTTCTATGGATACCAATAGTAACTTGGCAAGGGAACCGAATCATATTGATTCAATAAATGATTGTAAAAGAGTTGTCTATTCATATATTTCTAGGAAACTCTCCTCCGATACTGCCAACGCTGCATTTCGAATATTATCTGCCTGCAAAGTGAACAAAGTTTGTCCTTTGGATTTTGAGCAGCCCTCAGAAGTAATTAAAGATTGTCGCAATGTTGCTGCTCCTAATCCCTCATGCTGCAGCTCATTGAACACTTACATTGCTGGGATCCAAAAGCAAATGTTAATTACAAACAAACAAGCTATAATCTGTGCAACAATGTTCGGGTCCATGTTGCGAAAAGGTGGGGTTATTACAAATGTTTATGAGCTGTGTGATGTCGACTTGAAAGATTTCAGCATTCAAGCCTATGGACAGCAAGGATGTCTTCTTCGGAGCCTGCCTTCAGATGTGATATTTGACAATTCCACGGGCTTTAGTTTTACCTGTGATTTGACTGATAACATTGCAGCACCGTGGCCTTCGTCGTCCTCAATTTCTACACTGTCTCTTTGTGCGCCCGAGATGTCATTGCCTGCTCTACCAACAACAGAGACTAAGAGAAACCATGGCCAGCGTGAGGAAGGATTGGAATTCCCAATGCTCATTTTTTCATTTTTTATTATGATCAGTGCATTTTTGTACTGA 1725 41.51 MGQTNPLFPLDPDPNGSNKGKVCAFLHSFCHSPLSPVPTLAFTTTGSRFCLFNCTVNGVVQWVLLLQVVLAYLICYRAFFHELSKLQLGIILLTSCPLEVNRMMDCFRTVSYPNGNMCHRLLLFVVWISSFHDGVVLSTLVQHSLVSSTREQAQSPSSVVFDPIEISPAVIPQYPYPNDSLPPMYPTFPTRYEPVLTGRCPVNFSVISNVMDKTASDCSQPMAALVGNVICCPQLSSLLHIFQGFYGLTSDRLVLQEAVANDCFSDIISILASRGANQTIPSLCSVKSSNLTGGSCPVTDVATFEKSVNVSKLLDACDTVDPLKECCRPICQPAIMEAALQISGRQFSMDTNSNLAREPNHIDSINDCKRVVYSYISRKLSSDTANAAFRILSACKVNKVCPLDFEQPSEVIKDCRNVAAPNPSCCSSLNTYIAGIQKQMLITNKQAIICATMFGSMLRKGGVITNVYELCDVDLKDFSIQAYGQQGCLLRSLPSDVIFDNSTGFSFTCDLTDNIAAPWPSSSSISTLSLCAPEMSLPALPTTETKRNHGQREEGLEFPMLIFSFFIMISAFLY 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10443832 10448190 + CmaCh06G016990.1 Cma06g01699 297253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01699 574 Pfam SPARK 198 353 IPR043891 -
Cma06g01699 574 PANTHER GPI-ANCHORED PROTEIN 104 572 IPR040336 -
Cma06g01699 574 PANTHER GPI-ANCHORED PROTEIN 104 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01699 - - - csv:101221026 866.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01699 Cma14g01422 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00736 Cma-Chr13:6515420 Cma06g01699 Cma-Chr6:10443832 2.87E-93 transposed
Cma14g01422 Cma-Chr14:10930193 Cma06g01699 Cma-Chr6:10443832 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1282 . . . . . Bpe14g01071 . . . . Cma06g01699 Cma14g01422 . Car14g01253 Sed02g0971 . . Bhi01g03700 Tan10g1402 Cmetu07g1098 . . . . . . . . . . . . . . . . . . Cme07g01963 Blo02g00454 . . Bda13g00245 . . Bma02g00960 . . . Cmo14g01457 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005539 1 3 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01699 Cma_Chr06 FPKM 12.285714 13.07958 16.809946 15.521142 15.65281 13.362337 17.315193 17.597269 17.551428 19.172033