Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01701 ATGGAAAAACCCTTTTCGTCCAAGGAGGAAGGGATGATGGGGTATTGGGGACCTTCCAGAACTCACGCCGAAACTATGAATTCCACTGACGCTGGAATGAGGATTTTGAGTCCTGAAGATGTCCTCCCCTCCTTCTCTGACATGATGAATTTTGATTCTTATGCTGCAATCGATCAGATTTTCACATCTTGTGGGTTTTCATCGATACCCCAAATGAGTACTTGCGGTTCTATCGAGGGCTTGTCTTTTGTAGAAGGAGGGTGCCATGAAGGATTTCCTCTGAATGAACATGGTGGATCTTCCATTTCCATGGCGAATTCTTTTACTTGTGGGGACAAGGTGATGTTTCACCTGCCAGACACTGAATTTGGGGTGTCTAATGTTTCGGACAACGCTAACAAAGTAGATTCTAAATCAAATGATGTCCCTGTAGACATGGATAGCTGTCTGATCTCTAGGCCGTTTGGTTGGTCACTTGATGAGAAAATGCTGAGGGTTTTATCCATGTTTAAAGAGTCATCACCTGGAGGTATTTTGGCTCAAGTTTGGGTTCCTGTGAAGCGTAGAGACCAATTCTTCTTGAGCACCAGCGAGCAGCCATATTTGCTTGATCAAATGCTCACAGGGTACCGTGAAGTGTCGAGGTCGTTTACATTCTCAGCAGAAGGAAAACTGGGTTCTCTCCTTGGGCTTCCTGGTCGTGTTTTCACCTCCAAACTCCCAGAATGGACATCAAATGTTAGATATTACAGTGACCACGAGTATCTGAGAATGCAACATGCAATTGGTCATGACGTTTATGGATCGATTGCCTTACCGGTATTCAATAACGAAGTCGAAAAATCATGCTGTGCCGTACTTGAAGTTGTTACTACAAAGGAGAAGCCCAATTTTGATGCAGAAATCGACATTGTTTCCCAAGCACTAGAGACTGTTAGCTTGAGCACTGTTCCGCCTCCTCGACTTTATTCGCAGTGCTTGAAGAAGAACCAGAGAGCTGCATTGGCAGAGATAGTGGACGTGCTACGTGCTGTATGTCATGCACATAGACTACCTCTTGCCCTAACCTGGATTCCTTGTTGTTATTCTTTGGACGCCGTTGATGAGGTTGCAAGAGTTCGTGTTAAGGAGAACAACATTAACCCAGAGGAGAAATTTGTATTATGTATCGAGGAAACAGCATGTTATGTGAATGACAAATCAACTCAAGGATTTGTGCATGCATGTTTGGAGCATCATCTTGAAGAAGGGCAAGGGATAGCTGGGAAAGCTCTTCAATCTAATCATCCCTTCTTTTATCCTGACGTGAAGGCATATGATATTAATAAATATCCGCTGGTCCATCACGCACGCAAGTTTGGCTTGAATGCTGCAGTTGCAATCAGGCTGAGAAGCATGTACACCGGCAACGATGATTATATACTTGAATTCTTTCTACCTGTCAATATGAAAGGAGCTGCAGAACAACAACTATTGTTAAACAATCTCTCTGTTACCATGCAAAGAATGTGCAGGAGTTTGAGGACAGTTTCAAAGGAAGAACTAATAGGGGCTGAGGATTCTGTTGTTGACTTTCAGAGTGGATTAATTGGGAAGTCCACAACTACATCAATGAGAAACTCGCAATCCACGGTAACAGACCGTGAAACAAGGGTGTCTAACTCGATAAATAATGGAGCTGAAGCGGAATGTCCTGAGAAGCAGATGACTGATGGATCACGGAAGCAGGGGGAGAAAAAACGTAGCACATCCGAAAAAAACGTGAGCTTGAGTGTTCTACAGCAATATTTTTCTGGGAGTCTCAAGGATGCAGCAAAGAGCATTGGTGTTTGTCCAACAACGCTGAAAAGAATATGCAGACAACACGGGATTTTGAGGTGGCCGTCCCGTAAGATAAACAAGGTAAATCGTTCGTTAAGGAAAATACAGACGGTTCTTGATTCTGTGAAGGGGGTGGAGGGCGGCCTGAAGTTTGATCCAACTACAGGGTGTCTTATGGCTGGTTCTCTTATTCCAGAATTCAATGCACAAAATAGTCTTCTCTTCTCTGATAATAACCCAGCTATACCAAACCTTGACCCGTTCCTTCACGACGTAAATTCAGTTCCTTCTGCCCCTTTCAATACTCAGAATTCTGCCATCAAACTGGAAATGGACGAGTCTTCTGTTTCTATATCCCAAAGAACGTCATCGAGGAGTGTTCTCATTCCAGAGAAGGAACCGAACGTTCGCCAGCGTGATTGTAGTGAAGGTTTGGAGTCCGCTGGTGTAGATGCTGCATCATGCCAGCTTGCTGATCTGGATATGATGAGTTGGGATGTCCAAGGGAATGCCTCAGTTTCTATTGCTGCTAAAAAAAGCGACAGATTGGATTTTGTGAAGAACGATTTGAGATCAGGAGATGCCGACTGCCAATTTATGGCAAAGAGCTTGATCTCTTTTGCAGCTGCTGATGAAGTCGGTACCGTGTTGAATGAACATTACCAGCCAACTACTTCGAGCATGACCGACTCATCAAATGGCTCTGGCTTAATGATTCATGGCAGTTCATCTAGCAGTCAGAGCGTCGAGAGGAAGCATTTGCCAGAAAAAGTTGGCTCGGTTGACAGCGAGTCCAAGATTATTGTAAAAGCTTCATACAAAGACGACACAGTTCGATTCAAGTTCGATCCTTGTTTAGGATATCTCCAGCTCTACGAAGAAGTTGGCATGCGATTCAAGTTAAACCAAGGAACATTTCAACTCAAATACCTAGACGATGAAAAAGAATGGGTGATGCTAGTAAGCAATTCAGACTTACAGGAATGTCTCGAGGTGATGGACGAAATCGGCACGAGAAATGTGAAGTTTCTCGTCCGTGAAATCGCGTGTGCTGTGGGCAGTTCAGGCATCCCTCCTACCCATTACCCCGAACCCTGCAGGTTTTTCCTGCCCGACGCTGTCTCGGTCGCCGCCGCAGTCTGCACTCTCAGCCTTCCCGCTGCTTCCTTCCTCTCCCTCTATTTCAGAAACTCAGTGGTTCAGCAGCATTTTACCCGCGTCAGGGTTAATCTCTCACTACTCCAAGCAGGCTTTCATTTCGCCTTGGCTATGGGGAAGAAACGTAATAACGAGAAACAGAAGGTAATTCTACCGCCGGACCTTCCACCAGAGGTTACCGAGGAAGAAATTGAGGTCTCCGATGAGGATTTGGAGTTTGTCAAGGAGAACCAGGACTATGCCGTCTCTGTTACTCGTCTAGACACTAAATCCATTACCAAGCATGTTACACGTGTTGCTAATGTTGAAGAAGATGCTTTGGAGGTTTTATACGAGAAGCGTCTGCGCAAGAAGCCACTGCCGAAACCGGAGGAGGAAAATAAGACCCAGGTTGATCGCGTGGATGCTCTTCCTGTCAAAACACTTGAGGGGGAACTTTACTACCGGACATCAAAAACATCTGATGCACCTGAGGATGGTGGGAACGAAGAGGCAACGGAAGAGGACAGGGTAGATAATGGTGTATTGAAGTTAACTAAAGCGGAAAGGAGGGCAAAGCTGAAGAAAACTAAAAAGGTTGCCAAGAAACAAGAGGATGTAACCAAAGCTGAAGAAGTTGAACCAACCCCTCAAGCAGCCGTTTTGGCGGAAGTGGTAGAAGATCTTACTGCTGAAAAGACATTTGAAAGTAAGAAGCAGAAACTTGCGGAGCTTGGAATTGCGTTGCTGGCAGACCCAAATTCCAATATTAAATTTCTGAAGGAGATGCTACAGATTGTTAAGGATAATGATCCAGCAATTGTGAAACTTGGACTTCTATCATTATTGGCTGTCTTTAAAGACATCATACCTGGTTATCGGATTCGGCTTCCAACAGAAAAGGAGCTAGAAGTTAAAGTATCCAAGGATGTCAAGAAAATGCGGTACTATGAGTACACTCTTCTCACTACTTATAAGGGATACCTGCAGAAGCTGATGTCATTAGAGAAATCTACGGCATTTCAGCATATTGTTATTCGCTGTATCTGTACGTTGCTTGATGCAGTTCCCCACTTCAATTTTCGAGAGACATTGTTGGGCATTGTTGTTCAAAATATAAGCTCCCCTGATGATGTTGTAAGAAAACTCTGTAGTGGTGCTATTGAGTCTTTATTTATCAATGAGGGAAAGCATGGTGGTGAAGCGACTGTGGAGGCTGTCCGGTTGATTGCTGATCATGTGAAATTTCATGACTGCCAATTGCATCCTGATTCCATCCAGGTTGCTGCGGATTACAGGGCTGCTTCTCTTGCTCCAGATGTGATGAAGCAAAGAGAGATGCAGTCAGATACACTTCGTGCTGTATTTGAAACATATTTCCGAATCTTAAGGCATACAATGCAGTCATTAAAGGCTAGGCCTGAAGCAAATATTACTGCATCTACTACTAGCCCATCTGGATCCCACCCTCTGCTTGCTCCATGTTTGAATGGGTTGGGGAAATTTTCTCATCTGATCGATTTAGATTTCATGGGAGATCTTATGAATTATCTAAAAAGGCTTGCTTCTGGTGATGATAAATCTTCTGAGAAACAGTCACAATGTTTGACCGTTTCTGAGCGCCTTCAGTGTTGCATCGTGGCATTTAAAGTAATGAGGAAAAACCTTGATGCTTTGAATGTTGATCTTCAGGACTTTTTTGTCCAGCTGTACAATATTGTACTCGAGTACAGGCCTGGAAGAGATCATGGTGGATTGTTAGCTGAAGCTTTGAAGATAATGTTGTGCGATGATAGACAGCATGACATGCAAAAGGCAGCTGCATTCATTAAGCGTTTGGCTACTTTCTCATTATGCATTGGATCTGCAGAGTCGATGGCAGCCTTGGTCACCGTAAGGCATCTTCTTCTGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATGCTGGGGGAGGTTCAGTGTCTGGCTCAATAGCGAAATATCAACCATATGCTTCTGACCCAACATTGAGTGGCGCGCTTGCTTCTGTCCTTTGGGAACTTAATCTTCTATGGAAGCATTATCATCCAACTATCTCAACGATGGCAGCGAGCATATCAAGCATGAATAATGCTCAAAACCAAGTTTATATCTCCACTGTTTCTCCTCAACAGGCATTCAAAGACTTGTCGCTGGAACATGAGTCTTTCAACCCACAGTTTAATGTCCGAAAAGTTAACAAGAAAAAAAGAGGCAGGGAATCCGAGCCTACTCCCGATACTTGCAGCACCATCGACGAAAATGAAGTGAAAGAGAAACTTTCAACAAGATTCTTTCTTCTCCGGGACATCAAGGAGAATGAAAGGTTGAGAGCTGAATTGGAGCGTACCACTTTGTCTTTGCAGCTATATGAAGAATACAAAAGGCAAAAGAGAAAAAGTAAAAAATCCAGGAATGTTTAA 5403 43.92 MEKPFSSKEEGMMGYWGPSRTHAETMNSTDAGMRILSPEDVLPSFSDMMNFDSYAAIDQIFTSCGFSSIPQMSTCGSIEGLSFVEGGCHEGFPLNEHGGSSISMANSFTCGDKVMFHLPDTEFGVSNVSDNANKVDSKSNDVPVDMDSCLISRPFGWSLDEKMLRVLSMFKESSPGGILAQVWVPVKRRDQFFLSTSEQPYLLDQMLTGYREVSRSFTFSAEGKLGSLLGLPGRVFTSKLPEWTSNVRYYSDHEYLRMQHAIGHDVYGSIALPVFNNEVEKSCCAVLEVVTTKEKPNFDAEIDIVSQALETVSLSTVPPPRLYSQCLKKNQRAALAEIVDVLRAVCHAHRLPLALTWIPCCYSLDAVDEVARVRVKENNINPEEKFVLCIEETACYVNDKSTQGFVHACLEHHLEEGQGIAGKALQSNHPFFYPDVKAYDINKYPLVHHARKFGLNAAVAIRLRSMYTGNDDYILEFFLPVNMKGAAEQQLLLNNLSVTMQRMCRSLRTVSKEELIGAEDSVVDFQSGLIGKSTTTSMRNSQSTVTDRETRVSNSINNGAEAECPEKQMTDGSRKQGEKKRSTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLRKIQTVLDSVKGVEGGLKFDPTTGCLMAGSLIPEFNAQNSLLFSDNNPAIPNLDPFLHDVNSVPSAPFNTQNSAIKLEMDESSVSISQRTSSRSVLIPEKEPNVRQRDCSEGLESAGVDAASCQLADLDMMSWDVQGNASVSIAAKKSDRLDFVKNDLRSGDADCQFMAKSLISFAAADEVGTVLNEHYQPTTSSMTDSSNGSGLMIHGSSSSSQSVERKHLPEKVGSVDSESKIIVKASYKDDTVRFKFDPCLGYLQLYEEVGMRFKLNQGTFQLKYLDDEKEWVMLVSNSDLQECLEVMDEIGTRNVKFLVREIACAVGSSGIPPTHYPEPCRFFLPDAVSVAAAVCTLSLPAASFLSLYFRNSVVQQHFTRVRVNLSLLQAGFHFALAMGKKRNNEKQKVILPPDLPPEVTEEEIEVSDEDLEFVKENQDYAVSVTRLDTKSITKHVTRVANVEEDALEVLYEKRLRKKPLPKPEEENKTQVDRVDALPVKTLEGELYYRTSKTSDAPEDGGNEEATEEDRVDNGVLKLTKAERRAKLKKTKKVAKKQEDVTKAEEVEPTPQAAVLAEVVEDLTAEKTFESKKQKLAELGIALLADPNSNIKFLKEMLQIVKDNDPAIVKLGLLSLLAVFKDIIPGYRIRLPTEKELEVKVSKDVKKMRYYEYTLLTTYKGYLQKLMSLEKSTAFQHIVIRCICTLLDAVPHFNFRETLLGIVVQNISSPDDVVRKLCSGAIESLFINEGKHGGEATVEAVRLIADHVKFHDCQLHPDSIQVAADYRAASLAPDVMKQREMQSDTLRAVFETYFRILRHTMQSLKARPEANITASTTSPSGSHPLLAPCLNGLGKFSHLIDLDFMGDLMNYLKRLASGDDKSSEKQSQCLTVSERLQCCIVAFKVMRKNLDALNVDLQDFFVQLYNIVLEYRPGRDHGGLLAEALKIMLCDDRQHDMQKAAAFIKRLATFSLCIGSAESMAALVTVRHLLLKNVKCRNLLENDAGGGSVSGSIAKYQPYASDPTLSGALASVLWELNLLWKHYHPTISTMAASISSMNNAQNQVYISTVSPQQAFKDLSLEHESFNPQFNVRKVNKKKRGRESEPTPDTCSTIDENEVKEKLSTRFFLLRDIKENERLRAELERTTLSLQLYEEYKRQKRKSKKSRNV 1800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10452238 10464666 - CmaCh06G017010.1 Cma06g01701 297255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01701 1800 MobiDBLite consensus disorder prediction 1141 1164 - -
Cma06g01701 1800 MobiDBLite consensus disorder prediction 831 856 - -
Cma06g01701 1800 Pfam RWP-RK domain 587 635 IPR003035 -
Cma06g01701 1800 Coils Coil 1767 1787 - -
Cma06g01701 1800 MobiDBLite consensus disorder prediction 567 585 - -
Cma06g01701 1800 Pfam CBF/Mak21 family 1528 1683 IPR005612 -
Cma06g01701 1800 SMART PB1_new 873 955 IPR000270 GO:0005515
Cma06g01701 1800 SUPERFAMILY ARM repeat 1241 1565 IPR016024 -
Cma06g01701 1800 SUPERFAMILY CAD & PB1 domains 868 956 - -
Cma06g01701 1800 MobiDBLite consensus disorder prediction 831 857 - -
Cma06g01701 1800 Pfam Nucleolar complex-associated protein 1224 1314 IPR011501 -
Cma06g01701 1800 PANTHER PROTEIN NLP8 6 963 IPR045012 GO:0003700
Cma06g01701 1800 MobiDBLite consensus disorder prediction 534 561 - -
Cma06g01701 1800 Pfam PB1 domain 876 953 IPR000270 GO:0005515
Cma06g01701 1800 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 963 - -
Cma06g01701 1800 MobiDBLite consensus disorder prediction 534 586 - -
Cma06g01701 1800 ProSiteProfiles PB1 domain profile. 873 955 IPR000270 GO:0005515
Cma06g01701 1800 ProSiteProfiles RWP-RK domain profile. 574 655 IPR003035 -
Cma06g01701 1800 Gene3D - 869 955 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01701 Cma14g01419 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01701 Cma-Chr6:10452238 Cma16g00528 Cma-Chr16:2695380 2.21E-18 dispersed
Cma18g01327 Cma-Chr18:10140319 Cma06g01701 Cma-Chr6:10452238 6.67E-08 dispersed
Cma11g01975 Cma-Chr11:12938167 Cma06g01701 Cma-Chr6:10452238 7.54E-22 transposed
Cma11g01976 Cma-Chr11:12940117 Cma06g01701 Cma-Chr6:10452238 3.12E-18 transposed
Cma19g01099 Cma-Chr19:9109361 Cma06g01701 Cma-Chr6:10452238 8.55E-51 transposed
Cma19g01100 Cma-Chr19:9110902 Cma06g01701 Cma-Chr6:10452238 3.55E-85 transposed
Cma14g01419 Cma-Chr14:10918230 Cma06g01701 Cma-Chr6:10452238 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35301 PF03914 CBF 4.60E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01701 - - csv:101222520 1543.1