Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01708 ATGCAGATGATGATCTCCAAGGCCTCCTCTGCCATGGCCTCCTTGCCTTGCACTAGGACGAAGATGCAGATGATGATCTCCAAGGCCTCCTCTGCCATGGCCTCCTTGCCTTGCACTAGGATGATGATCTCCAAGGCCTCCTCTGCCATGGCCTCCTTGCCTTGCACTAGGGTGAGAAGCGTATGTGTCTGGCCGAGCGTTAAACAACTTTCGTTTAGAAAAGACCTTTTATATGGGGTTATGCGACTCTTATCTACTCCATTGAAAACGTTGCGTGGAGCTAGTCGTTCACTTAAAGTTGCTCAGTTTTGCAGTGTCGTCAATATGTCCTCCACCTTGCAAATTGAACTGGTACCATGTCTTCGTGATAACTACGCATACCTCTTACACGATGTTGACACGGGCACAGTTGGCGTTGTTGATCCTTCTGAAGCTCTACCAGTTATAGATGCTTTAACCAAGAAAAATAGAAATTTGACATATATACTTAATACTCACCATCATGATGATCACACAGGTGGAAATGAAGAATTAAAAGCAAGGTACGGAGCGAAGGTGATTGGCTCTGGAATAGACCGTGACATGATTCCTGGAATTGATATAACCTTAAGAGATGGAGACAAGTGGATGTTTGCTGGCCATGAAGTGCATGTAATGGAAACTCCTGGTCATACTCGAGGTCATATTAGTTTCTATTTTCCTGGATCAGCAGCAATTTTTACTGGTGATACATTATTCAGCTTATCTTGTGGCAAGCTTTTTGAAGGAACTCCCGAACAGATGCTATCTTCCCTCAAAAAAATCACTTCTTTGCCAGATGATACAAACATATTTTGCGGTCATGAGTATACTTTGAGTAACTCTAAATTTGCTTTGTCCATTGAACCTAAGAACGAGGCTCTCAAATCTTTTGCAACCCAGGTTGCCAATCTACGAAGCAAGGGCTTGCCAACGATTCCAACAACATTAAAGATGGAGAAAATGTGCAATCCGTTCCTCCGTACTTCAAGTACAGAAATTCGGCAGTCGTTAAAAGTTCGAAATACAGCGGATGATGCAGAGGTCTTGGGTATCATTCGCAAAGCTAAGGATAAATTTTAG 1101 43.14 MQMMISKASSAMASLPCTRTKMQMMISKASSAMASLPCTRMMISKASSAMASLPCTRVRSVCVWPSVKQLSFRKDLLYGVMRLLSTPLKTLRGASRSLKVAQFCSVVNMSSTLQIELVPCLRDNYAYLLHDVDTGTVGVVDPSEALPVIDALTKKNRNLTYILNTHHHDDHTGGNEELKARYGAKVIGSGIDRDMIPGIDITLRDGDKWMFAGHEVHVMETPGHTRGHISFYFPGSAAIFTGDTLFSLSCGKLFEGTPEQMLSSLKKITSLPDDTNIFCGHEYTLSNSKFALSIEPKNEALKSFATQVANLRSKGLPTIPTTLKMEKMCNPFLRTSSTEIRQSLKVRNTADDAEVLGIIRKAKDKF 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10500110 10506823 - CmaCh06G017080.1 Cma06g01708 297262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01708 366 ProSitePatterns Beta-lactamases class B signature 1. 163 183 IPR001018 GO:0008270|GO:0008800|GO:0017001
Cma06g01708 366 PANTHER HYDROXYACYLGLUTATHIONE HYDROLASE 42 366 - -
Cma06g01708 366 TIGRFAM GSH_gloB: hydroxyacylglutathione hydrolase 116 366 IPR017782 GO:0004416|GO:0019243
Cma06g01708 366 CDD hydroxyacylglutathione_hydrolase_MBL-fold 118 281 IPR035680 -
Cma06g01708 366 Hamap Hydroxyacylglutathione hydrolase [gloB]. 113 366 IPR017782 GO:0004416|GO:0019243
Cma06g01708 366 SMART Lactamase_B_5a 123 281 IPR001279 -
Cma06g01708 366 Pfam Metallo-beta-lactamase superfamily 125 281 IPR001279 -
Cma06g01708 366 Gene3D - 113 366 IPR036866 -
Cma06g01708 366 PANTHER BETA LACTAMASE DOMAIN 42 366 - -
Cma06g01708 366 SUPERFAMILY Metallo-hydrolase/oxidoreductase 113 366 IPR036866 -
Cma06g01708 366 Pfam Hydroxyacylglutathione hydrolase C-terminus 282 366 IPR032282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01708 K01069 gloB, gloC, HAGH; hydroxyacylglutathione hydrolase [EC:3.1.2.6] - csv:101223148 611.298
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01708 Cma14g01412 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01708 Cma-Chr6:10500110 Cma09g00692 Cma-Chr9:3266932 3.22E-12 dispersed
Cma04g01054 Cma-Chr4:5447756 Cma06g01708 Cma-Chr6:10500110 4.01E-59 transposed
Cma14g01412 Cma-Chr14:10865338 Cma06g01708 Cma-Chr6:10500110 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1275 . . . . . Bpe14g01061 . . . . Cma06g01708 Cma14g01412 . Car14g01242 Sed02g0960 . . Bhi01g03727 Tan10g1384 Cmetu07g1769 . . . Lcy11g1001 . . . . . . . . . . . . . . Cme07g01973 Blo02g00447 Blo07g00115 Bda11g00477 Bda13g00253 . . Bma02g00969 Bma06g01440 . . Cmo14g01447 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006291 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01708 Cma_Chr06 FPKM 7.082499 6.786061 13.048784 13.380976 15.159096 16.117668 16.787092 13.418023 15.055714 13.635563