Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01737 ATGTACCATCATCATCATCAGCATAATAGAGGGAAGAGCATCCATTCCTCTGACACCCATTTGTTTCTTCAACCTGGGAATGCAGCTGCTGGAGCTGGAGATTCATCAGGCCTTGTTCTTTCCACCGACGCCAAGCCCAGGCTTAAATGGACTCCTGACTTGCACGATCGCTTTGTTGAAGCTGTCAACCAGCTTGGAGGGGCTGACAAGGCCACTCCTAAAACTGTCATGAAAATCATGGGCATTCCTGGCCTTACCTTGTACCACTTGAAAAGCCATCTCCAGAAATATAGGCTGAGTAAGAATGTACATGGACAAGCGAATGGTGAAGGAAATGGAAGCAACAAAACTGGGACAGTGGCGGCTGTTTACGGCGATCAAAGACGGGCAGCGGAGGCAAATGGAACAGCCCGCACCAACAACATAGTGGTCGCCCCACAGCCCTCCTCCCACCCCAACAAAAGCCTTCAGATCAGTGAAACAATACAGATGCAGATTGAAGTCCAGAAAAGGCTGCACGAGCAGCTCGAGGTACAACGGCACTTGCAGCTGCGAATAGAAGCACAAGGGAAGTATCTTCAAACAGTGCTGGAGAAAGCACAAGAGACACTAGGAAGGCAGGACTTGGGGTCAGTGGGTCTTGAGGCTGCAAAAGTGCAGCTCTCGGAGTTGGTCTCCAAGGTCTCCACTCAATGCCTAACCGCAGCGTTTCCAGAGCTCCAACAAAGTCAAAGGCTATGTCCTCAACAAACGCAGCCCCCTGACTGCTCCATGGACAGTTGCCTGACCTCCTGCGAGGCCTCCAAGGACCAACAACAACAAGTCCTTCTCCATAACTCCCAACACGCCCTCCGACCGAAAGCCATCGCCACCGACCATCATGGGCTGTCCATAAGCATTGGGCTGCTGCAGGGGGACAAGGGCGGGGAAGGGGATAATGGGTATTCCCCCTCGTTTGGGAGTAAGAAAAAGGAGGGTGAGGCGGCGTTTAGATATAGAATGGCAGCTTCTTTTTTGGACTTGAATGCTGGTGAGGATCAACAACTTAGTAATAATGATCATGCGGCTTCTGCTACTTGCAAGATGTTTGACCTTAATGGCTTTAGTTGA 1110 50.9 MYHHHHQHNRGKSIHSSDTHLFLQPGNAAAGAGDSSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNVHGQANGEGNGSNKTGTVAAVYGDQRRAAEANGTARTNNIVVAPQPSSHPNKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETLGRQDLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQSQRLCPQQTQPPDCSMDSCLTSCEASKDQQQQVLLHNSQHALRPKAIATDHHGLSISIGLLQGDKGGEGDNGYSPSFGSKKKEGEAAFRYRMAASFLDLNAGEDQQLSNNDHAASATCKMFDLNGFS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10622119 10624585 - CmaCh06G017370.1 Cma06g01737 297291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01737 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Cma06g01737 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Cma06g01737 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 279 IPR044848 GO:0003700
Cma06g01737 369 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Cma06g01737 369 PANTHER MYB-RELATED PROTEIN 2 7 279 - -
Cma06g01737 369 Pfam MYB-CC type transfactor, LHEQLE motif 156 203 IPR025756 -
Cma06g01737 369 Gene3D - 44 102 - -
Cma06g01737 369 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01647 Cma-Chr2:9335073 Cma06g01737 Cma-Chr6:10622119 1.62E-20 dispersed
Cma05g00862 Cma-Chr5:5961490 Cma06g01737 Cma-Chr6:10622119 6.90E-55 dispersed
Cma06g01737 Cma-Chr6:10622119 Cma14g01894 Cma-Chr14:13402453 4.36E-54 dispersed
Cma14g01088 Cma-Chr14:7468727 Cma06g01737 Cma-Chr6:10622119 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35303 PF00249 Myb_DNA-binding 5.20E-08 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01737 - - csv:101206445 510.76