Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01743 ATGGATGATGCTGCCATCAAAGATTGCATGCCTAAGGACCACAGGAGTAAAGATCATACTGTGGGTATGAGAGCAACGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTTCCACCTTCCGTTCCTGCACCACCGTCATCACTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAGGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCGGGTATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTAGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACAGAAAGCAGGAAGGAAAGGAGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGGAGTTAA 1089 43.89 MDDAAIKDCMPKDHRSKDHTVGMRATPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10644563 10655273 + CmaCh06G017430.1 Cma06g01743 297297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01743 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 355 IPR000504 GO:0003723
Cma06g01743 362 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 16 360 - -
Cma06g01743 362 MobiDBLite consensus disorder prediction 101 162 - -
Cma06g01743 362 PANTHER UNCHARACTERIZED 16 360 IPR045164 -
Cma06g01743 362 SMART rrm1_1 274 351 IPR000504 GO:0003723
Cma06g01743 362 MobiDBLite consensus disorder prediction 101 123 - -
Cma06g01743 362 Gene3D - 267 361 IPR012677 -
Cma06g01743 362 SUPERFAMILY RNA-binding domain, RBD 253 357 IPR035979 GO:0003676
Cma06g01743 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 347 IPR000504 GO:0003723
Cma06g01743 362 Coils Coil 221 241 - -
Cma06g01743 362 CDD RRM2_RBM40_like 272 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01743 K13157 RNPC3; U11/U12 small nuclear ribonucleoprotein 65 kDa protein - csv:101212553 546.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01743 Cma-Chr6:10644563 Cma13g00027 Cma-Chr13:367630 3.56E-06 dispersed
Cma06g01743 Cma-Chr6:10644563 Cma10g00083 Cma-Chr10:346447 1.92E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g966 . . . . . . . . . . Cma06g01743 . Car06g01478 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g984 . . . . Bpe04g01004 . . . . . Cma06g01743 . Car06g01478 . . Cpe08g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003933 0 0 1 0 1 2 1 1 2 0 2 1 1 1 1 1 1 0 1 1 1 0 1 1 2 2 1 8 3 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01743 Cma_Chr06 FPKM 3.916157 3.608577 6.612793 5.659153 8.223897 6.449142 6.55781 14.028175 12.784237 14.590821