Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01755 ATGAAGAACAAGGCGTCCCTTCTGTTGAAGAAAATCACTTCCATTTTGGGTGCCATAGCTAAGGCCAAGTCCATGGCCATCAACTCCAAATTCAGCCCCACCAAACCTCGTCTCCTCATGCTCTCCATGCTCAAGACCAAAAAACTTCTCGTCACTTCCCTCTCTAACAAGATCCACACCATTCTCGGCCAACACCACGGCGACTGCGACGACAACGACGACACCCAAGACAACCACAGCATGGCCATTGTCCTCTATGACGCCGCTGCCGCACACGCAAGCCAGTATCAATCGAGTGCGAGCTTGGCAATGGCAGCCAAGGCTGAGGAAGAGGATGATGACAAGTATCCTGACCTGACACACTCTCTATTCGACGAAGAGTATGACTATGACATCGACGATGCAAAGCTGCAGGCTGCCGGTGGCTCGATTATCGACATGATGAGGAACTCCAAGGAAGAAGGAGAGGAGTTCAAGCTGGAGGAAGAGATCGATGAGGCGGCAGACTTGTTCATAAAGAGGAGTGAGCCACCTCATTTCCCGCCAAAACATCCCGCCAAACACAACCTCCTCCATGAATCGAGTGCGTTTAGGTCACTGAAGTTCAGAGCTTTCAGTTTCTCCCCTTCTCCGACCCCCTCTCCCTTAGAAATGGCTGGAGAAACTCCCGATGGAAACTCCGGCAATCCGCCGTCGGAGCTCGATTCCCCCACCACCTCCGCTGGTTTCGAAACAGACCAGCTTCCTCATCTCAGCCACATTTCCGACAACTACCCCGACGAGGACGAAGCCGCCGTTGATCCTCACATCGTTCACGACGAGCCTGATCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAATTTCCTGGAAGATTATCGGAGGATGGACGACCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCTGAGATGGAACTCGAGACTCGTGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACACGACCATGACTCTGAGGATGACAATTACAGGCCTTCGAAAAGATCAAGAGCCGATTTTCGTCCTCCAGCTGCAGCAAGAAGCTACGATGACATTGATGGCATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACTGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAGCATGTTACCATGGATGCAGTTCGGCGCTTTATAGGCAAAAAGTTCAAGAAATTCTTGGAAACATATGTGAATCCTAAGAGTGGAAATGGAGAGCTCGAGTACATGCGACTGATTAATGAGATGGTTTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAGCAGTTTATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAATCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTGTTTGACCTACATCCGAACTACAAAAACATCCACCAAAAGATCTATGTTCGCATCAATAGTTTACCAGTTTATGACCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATTGGTGGCGTAGTGACTCGGCGATCTGGTGTGTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGAACAATATTGGGACCATTTTTTCAGAATTCTTACTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAGTCGAAGGGGCCATTTACATTAAATGTCGAGCAGACTATATATAGGAACTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTCCCAAGGTATAAGGAAGTGATACTCTTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAGGAAATTGAAGTCACTGGCATTTATACAAATAATTTTGACTTATCGTTGAATACAAAGAATGGTTTTCCTGTGTTTTCCACGGTTGTTGAAGCAAATTATGTTACCAAGAAGCAAGATCTCTTCTCTGCTTACAAGCTTACCCAGGAAGACAAAGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAATCCATTGCCCCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTTCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACATCGGTTACGAGGTGATATCAATGTACTTTTACTAGGTGATCCTGGCACTGCCAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGGGCTTCAGCTGTAGGACTAACAGCAGCAGTGCACAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGTGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTGATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATACATGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAAGCTGGAATTGTCACTTCTCTTCAAGCCAGATGCTCTGTCATTGCAGCTGCCAATCCCGTTGGAGGAAGGTACGACTCCTCAAAAACATTTTCACAAAATGTGGAGCTGACAGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGATGAGATGCTTGCTAAGTTTGTTGTTGATAGTCATTTCAAATCACAGCCGAAGGGCGGTAATATTGATGATAAGTCTGTAAATGAATCTCAAGAGGACAGTCAAGACTCTACAAGGCCACTGGATCCGGAGGTGCTTCCCCAAGATCTGCTGAAGAAGTACATAACTTATGCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACATGTCTACGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGGATGTCTGAAGCACATGCAAGAATGCACCTTAGGCAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCGACCCAAAAATTTGGGGTACAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGATTACAACGAACTGCTCCTATATCTTCTTCGAGAGCTGGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCTACATCGGAGCTTATCCACATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAGCATGAAATTTATGATTTGAAACCCTTCTTCACCAGCTCCCACTTTTCAAATGCTAATTTTCTGCTGGATGAAGAGCGTGGAGTAATCAAGCATCACCTTGCCAGATGA 3486 45.04 MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHTILGQHHGDCDDNDDTQDNHSMAIVLYDAAAAHASQYQSSASLAMAAKAEEEDDDKYPDLTHSLFDEEYDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRSEPPHFPPKHPAKHNLLHESSAFRSLKFRAFSFSPSPTPSPLEMAGETPDGNSGNPPSELDSPTTSAGFETDQLPHLSHISDNYPDEDEAAVDPHIVHDEPDPDEEEEGEDLYHDNFLEDYRRMDDHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAAARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQSVLEVMEDVAKKVVFDLHPNYKNIHQKIYVRINSLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTLNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAISLAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSQPKGGNIDDKSVNESQEDSQDSTRPLDPEVLPQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELIHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNANFLLDEERGVIKHHLAR 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10703085 10709838 - CmaCh06G017550.1 Cma06g01755 297309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01755 1161 MobiDBLite consensus disorder prediction 274 288 - -
Cma06g01755 1161 Pfam MCM N-terminal domain 445 537 IPR027925 -
Cma06g01755 1161 Gene3D - 545 670 IPR012340 -
Cma06g01755 1161 MobiDBLite consensus disorder prediction 289 310 - -
Cma06g01755 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 734 1058 IPR027417 -
Cma06g01755 1161 MobiDBLite consensus disorder prediction 947 961 - -
Cma06g01755 1161 Gene3D - 704 1078 IPR027417 -
Cma06g01755 1161 Pfam MCM P-loop domain 712 934 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g01755 1161 MobiDBLite consensus disorder prediction 225 252 - -
Cma06g01755 1161 Gene3D - 437 541 - -
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein family signature 765 780 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein family signature 853 866 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein family signature 877 889 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein family signature 825 839 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein family signature 904 912 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g01755 1161 CDD MCM2 727 1054 - -
Cma06g01755 1161 MobiDBLite consensus disorder prediction 392 407 - -
Cma06g01755 1161 MobiDBLite consensus disorder prediction 208 420 - -
Cma06g01755 1161 MobiDBLite consensus disorder prediction 940 965 - -
Cma06g01755 1161 MobiDBLite consensus disorder prediction 319 375 - -
Cma06g01755 1161 Gene3D - 572 622 - -
Cma06g01755 1161 Pfam MCM OB domain 544 671 IPR033762 -
Cma06g01755 1161 Pfam Mini-chromosome maintenance protein 2 261 416 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma06g01755 1161 ProSitePatterns MCM family signature. 833 841 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma06g01755 1161 PANTHER DNA HELICASE 362 1155 - -
Cma06g01755 1161 MobiDBLite consensus disorder prediction 255 273 - -
Cma06g01755 1161 Pfam MCM AAA-lid domain 971 1055 IPR041562 -
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 554 571 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 673 684 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 688 699 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 577 589 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma06g01755 1161 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 612 626 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma06g01755 1161 ProSiteProfiles MCM family domain profile. 724 930 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g01755 1161 SUPERFAMILY Nucleic acid-binding proteins 446 693 IPR012340 -
Cma06g01755 1161 SMART mcm 541 1056 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma06g01755 1161 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 362 1155 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01755 Cma-Chr6:10703085 Cma19g00684 Cma-Chr19:7093951 1.29E-101 dispersed
Cma12g01169 Cma-Chr12:9219512 Cma06g01755 Cma-Chr6:10703085 5.92E-105 transposed
Cma19g00466 Cma-Chr19:5576939 Cma06g01755 Cma-Chr6:10703085 2.97E-77 transposed
Cma14g01060 Cma-Chr14:5671365 Cma06g01755 Cma-Chr6:10703085 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01755 K02540 - csv:101219546 1728.76