Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00002 ATGGCTGCTGCAGCTTCCCATTTGAAGTTCCTTCTCACCCCTCTAACGCTTACACTTGCGTTGCTCCTCCTTCCTTGTGCCTTCTCCCACTCTCTATCCCTCAAGGCACAAGCTTCTCTTCTGGTTTCCATCAAACAGTGTTTCGATCAACCCACTCCCTTGCTCCTGGACTGGAATGCTTCAAATTACTCTTCCCTCTGCTCTTGGACTGGAATTCAATGCGACCACATGAACACATCACTAGTGTCGCTGGACATTTCCAATTCCAACCTCTCCGGGACCTTCCCCCCTCTAATTCACAACCTAACCAACCTTCGCTTTCTCAACATCTCCAACAATCAGCTCAGTGGACAACTCCACTGGGACTACTCTCAACTCAAACTGCTGCAGGTATTTGATGCTTACAATAACAACTTCAATGGGTCGCTCCCTACGGCCGTCCCTCAACTTCCCAGTTTAAAGCATTTAAATCTTGGCGGAAATTTCTTTAGCGGTGGAATCCCCCGAAGCTATGGTGCGATGGGGAAGCTCACTTACCTGTCGCTTGGCGGCAATGACCTGGGAGGTCCCATTCCCACTGAGCTCGGCAATCTAACCAACCTACAGCGGCTTTATTTAGGATACTTCAATGAGTTTGAGGGTGGAATACCCTCTGAACTCGGAAAGCTTGAGAATTTGAATCATCTCGACCTTGCCAGTTGTAGTTTACGGGGTCCAATCCCACCCGAGTTGGGGAACCTCAACAAGTTAGACACTCTGTTCTTGCAGACAAATCAGCTCACTGGTTCTATTCCTCCTCAGTTGGGCAACTTGAGCAGCTTGGTTTCGCTTGACCTCTCTAACAACGAACTAACTGGAGAGGTCCCCCTTGAATTTGCAAACCTCCGCCAGCTTTTGCTCTTGAACTTGTTCATGAACAAGTTTCATGGAGAGATTCCTGAGGGTCTAGCCGATCTTCCCAAGTTGGAGGTTCTGAAGGTGTGGCAAAATAACTTCACTGGAGCCATTCCATCAAAGCTTGGTGAGAATGGGAGAGTGACGGAGCTTGACTTGTCCACCAACAAGCTCACAGGACTGGTCCCGGAGCGTCTGTGCTTGGGAGGAAGGCTGAAGATCTTGATTTTACTGAACAATTTTCTGTTTGGGCCTCTGCCACGTGATCTAGGACGATGCCAGACGCTTGTGAGAGTTCGGATGGGCCAGAATTATTTGACGGGGCCAATCCCAGAGGGGCTGCTTTACTTGCCACAGCTCTCCCTCGTGGAATTGCAGAACAACTACCTGAGTGGACCCCTTCCACAAGATATGCGAATGCGTCCACTCACATCTAAACTCGGCCAGCTAAACCTTTCCAACAATCGCTTTTCTGGATCCCTTCCCACCTCCATCGGAAACTTCACAAACTTGCAGATTCTGCTTCTGCGTGGAAACCGTTTCTCCGGGGACATTCCTTCTGAAATAGGCAAACTGCGAAATCTTCTCAAGCTAGACATGAACAGCAACAACTTCTCCGGTAGAATCCCACCTGAACTGGGTGCTTGTGTCTCCCTCACTTACCTGGATTTGAGCCTTAATCACCTGACCTCTCCAATCCCAGTTCAAATCTCACAGATTCGCATCTTGAATTATCTGAACCTGTCTTGGAACCATCTGAACCAGAGCCTTCCGAAGGAAATTGGGTCTATAAAGAGCCTGACTTGTGGGGACTTTTCCCACAATGACTTGTCTGGTCCTATTCCCGAAACTGGTCAGTTTCTACTCTTCAATTCCACATCCTTCGAGGGCAACCCTCAACTGTGTGGATCCGCGTTGAATCCCTGCAACGTGTCAACCTCTAAATCTCAAACCTCAACGCCCGCCAATTCCAAAACTGTTGGGAAATATAAGCTTGTGTTTGCTTTGGGACTATTGATGTGTTCAGTAATATTTGCAGCTCTGGCAATTATTCAGACAAGGAAGGCGAAGAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGCAAGGACATCATAGAGTGCGTAAAAGAGAACAACATAATTGGAAAAGGTGGAGCTGGAATTGTGTACAGAGGAGTCATGCCAAGTGGAGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAAACAAGGGATCCTCCCATGACAACGGTCTGTCGGCGGAGATACAGACGCTGGGCAAAATCCGTCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCCAATAAGCAGACCAATCTGCTGGTTTACGAGTACATGCCCAATGGAAGTTTGGGAGAAGTTCTCCATGAAAAGAGGGGTGGTTGCCTGAAATGGGGAACCAGGCTGAAGATAGCTATAGAAGCGGCCAAAGGGCTTTGCTATTTGCACCATGATTGTTCCCCCCTAATAATTCATAGAGACGTCAAGTCCAACAACATTCTGCTCAACTCAGATTACGAGGCTCATGTAGCGGACTTCGGGTTGGCCAAGTTCCTGCAAGACAACGGAACATCGGAGTGCATGTCTGTCATAGCCGGTTCTTACGGGTATATTGCTCCAGAATATGCATACACATTAAAAGTGGATGAAAAAAGTGATGTTTATAGTTTCGGTGTAGTGTTGCTGGAGCTTATAACAGGGCGAAAGCCCGTGGGCAATTTCGGGGAAGATGGTTTGGACATCGTCCAATGGACTAAGATCCAAACCAACTCTACTAAAGAAGGAGTTGTTAAGATATTGGATCAAAGGTTGAGTAACATACCTATAGATGAAGCAAAGCAGATGTTTTTCGTTGCTATGTTATGCGTCCAAGAACATAGCGTGGAGCGGCCAACAATGAGAGAAGTGCTTCAAATGCTTGCACAAGCCCATCAACCAAATACCTTCCACATGCATTGA 2895 47.36 MAAAASHLKFLLTPLTLTLALLLLPCAFSHSLSLKAQASLLVSIKQCFDQPTPLLLDWNASNYSSLCSWTGIQCDHMNTSLVSLDISNSNLSGTFPPLIHNLTNLRFLNISNNQLSGQLHWDYSQLKLLQVFDAYNNNFNGSLPTAVPQLPSLKHLNLGGNFFSGGIPRSYGAMGKLTYLSLGGNDLGGPIPTELGNLTNLQRLYLGYFNEFEGGIPSELGKLENLNHLDLASCSLRGPIPPELGNLNKLDTLFLQTNQLTGSIPPQLGNLSSLVSLDLSNNELTGEVPLEFANLRQLLLLNLFMNKFHGEIPEGLADLPKLEVLKVWQNNFTGAIPSKLGENGRVTELDLSTNKLTGLVPERLCLGGRLKILILLNNFLFGPLPRDLGRCQTLVRVRMGQNYLTGPIPEGLLYLPQLSLVELQNNYLSGPLPQDMRMRPLTSKLGQLNLSNNRFSGSLPTSIGNFTNLQILLLRGNRFSGDIPSEIGKLRNLLKLDMNSNNFSGRIPPELGACVSLTYLDLSLNHLTSPIPVQISQIRILNYLNLSWNHLNQSLPKEIGSIKSLTCGDFSHNDLSGPIPETGQFLLFNSTSFEGNPQLCGSALNPCNVSTSKSQTSTPANSKTVGKYKLVFALGLLMCSVIFAALAIIQTRKAKKKSSSWKLAAFQKLEFGSKDIIECVKENNIIGKGGAGIVYRGVMPSGEQVAIKKLLAINKGSSHDNGLSAEIQTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHEKRGGCLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDYEAHVADFGLAKFLQDNGTSECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWTKIQTNSTKEGVVKILDQRLSNIPIDEAKQMFFVAMLCVQEHSVERPTMREVLQMLAQAHQPNTFHMH 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17720 22530 + CmaCh07G000020.1 Cma07g00002 297317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00002 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 17 94 - -
Cma07g00002 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 90 961 - -
Cma07g00002 964 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Cma07g00002 964 ProSiteProfiles Protein kinase domain profile. 680 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00002 964 Pfam Protein kinase domain 682 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00002 964 Pfam Leucine Rich Repeat 152 170 IPR001611 GO:0005515
Cma07g00002 964 PANTHER UNNAMED PRODUCT 90 961 - -
Cma07g00002 964 PANTHER UNNAMED PRODUCT 17 94 - -
Cma07g00002 964 SUPERFAMILY Protein kinase-like (PK-like) 676 952 IPR011009 -
Cma07g00002 964 Gene3D Phosphorylase Kinase; domain 1 645 757 - -
Cma07g00002 964 Gene3D Ribonuclease Inhibitor 187 288 IPR032675 -
Cma07g00002 964 Gene3D Ribonuclease Inhibitor 487 608 IPR032675 -
Cma07g00002 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cma07g00002 964 Gene3D Ribonuclease Inhibitor 426 486 IPR032675 -
Cma07g00002 964 SUPERFAMILY RNI-like 77 381 - -
Cma07g00002 964 Gene3D Ribonuclease Inhibitor 33 186 IPR032675 -
Cma07g00002 964 Gene3D Transferase(Phosphotransferase) domain 1 758 963 - -
Cma07g00002 964 SMART serkin_6 680 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00002 964 SUPERFAMILY L domain-like 292 608 - -
Cma07g00002 964 Gene3D Ribonuclease Inhibitor 289 425 IPR032675 -
Cma07g00002 964 SMART LRR_typ_2 538 562 IPR003591 -
Cma07g00002 964 SMART LRR_typ_2 174 198 IPR003591 -
Cma07g00002 964 SMART LRR_typ_2 319 343 IPR003591 -
Cma07g00002 964 SMART LRR_typ_2 102 125 IPR003591 -
Cma07g00002 964 SMART LRR_typ_2 490 514 IPR003591 -
Cma07g00002 964 SMART LRR_typ_2 223 247 IPR003591 -
Cma07g00002 964 SMART LRR_typ_2 271 294 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00002 Cma-Chr7:17720 Cma16g00776 Cma-Chr16:4268101 0 dispersed
Cma07g00002 Cma-Chr7:17720 Cma04g00900 Cma-Chr4:4686817 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68670 PF00069 Pkinase 4.80E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00002 - - vvi:100258232 1416.75