Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00004 | ATGGCAAAAGACCGAGAAAAGAGGATGTATGTCGGAGTTTTTTTTAGCTATGCTGCGGAACTCAAGCTTTTTCTTTCCGCTCTCCTCCTTCTCTGTGCTCTCGCTACTCTCCTCCAGTTCCTTCCTTCTCGTTTCACGCTCTCTATCGCAGATCTCCGTTCCTGCTCCGCCGCCCGAGATTCCCCCCCTCCTCCTCCTCCACCTTCTTCTCTATCAGCAACACTCCGTTCTTCTGTACCCCCTCCAACTCTCATCCCCTCCCCTCCAACAGATCAGCTGCTTCCCAATGGCGTTCTCCGCCGCGCTTTTCACCCTTACGGTGCTGCTGCTTATAACTTCATTACTATGGGTGCTTACAGAGGCGGCCTCCACAACTTTGCCATTGTTGGTTTAGCCTCCAAGCCTCTTCACGTCTTTGGGCGTCCCACTTTCCAATGCCAGTGGATTCCTCGCCTCCACCCCTCTAGTCCCATCAACGCCTCCGCCTTCAAGATCCTTCCCGACTGGGGCTACGGTCGCGTTTACACCGTTGTCGTCGTCAATTGCACTTTCTCTCACCCTGTTAATGCCGACAACCAGGGTGGAAAATTGGTTCTCTATGCCTCCACTTCCGGTGGCGGAGATCGCGACATCAACCTTACCGACACGATTGAGGTGCTAACAGAAACCCCCGGTGGAATGAACGCTTCCCTTTTCACATCGAAGCCCAAATATGACTATCTCTACTGTGGGTCGTCCCTGTATGGGAACTTGAGCCCCCAGAGAGTGAGAGAGTGGTTGGCATACCATATCAGGCTATTCGGGGCCAGATCCCACTTTGTAATACATGATGCGGGCGGGGTTCATGAGGAGGTGCTGGAAGTTTTAAAGCCATGGATGGAATTGGGGTATGTGACATTGCAGGACATCAGGGAGGAGGAAAGGTTCGATGGATACTATCACAACCAATTCATGGTGGTGAATGACTGTTTGCATCGGTACAAGTTTATGGCCAAGTGGATGTTCTTCTTCGACGTGGATGAGTTCATCTTCGTGCCGCCGAAGAACACCATAAAATCAGTTCTGGATTCGCTTTCAGAGTACTCCCAGTTTACAATTGAGCAGATGCCCATGAACAGCAAGACGTGTCTGACAGAGGATGCGGGGAGAACCTACAGGAAGTGGGGGTTTGAGAAGCTGGTATACAAGGATGTGAAAAGGGGAATAAGGAGGGACAGGAAGTACGCAGTGCAGCCGCGGATGGTGTATGCGACGGGGGTGCACATGTCGGAGAACGTAGCCGGGAAGTCCACACACAAGACGGACAGGATCATAAAATACTTCCATTACCATGGCACCATTGCGCAGAGGAGGGAGCCCTGCCGCTCCCTTTCCAATGAAACCCAGCTTACTCTCGACAACACCCCCCATGTGTTGGACACCACCATGCGCCTCGTCGCCCCCGCCGTCAAGAGATTCGAGCTCAAAATGATCGGTACCAGTATAGAGAAAGAGGAGATGGGTGGTGTCGGCATCCCACCCAAACAGAAGCGACACACTGGTGAAGATATGGAGAGCCATGGAGTTGGTAATTATTTCGTGGATGAGAAGTCTGTTCTTGTCGAAAACATTTTCTTCGACTTCCTCAAGAGTTTTCGCCTCGTTGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTCGCTCACCTTATGCGCTCCAATGATCTTCTCCACGTAGCAATCGCCGACGAATATCTCAGGTTTGAACCATACCTCAAGAACGCTTGCAAGCGATTCGTAATGGAGCATAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCCGTTTCTAAAAGGTTGAGAGAATTGACCACTGCAGAAATTGGGAAATTAGTATCCGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGGAATGTTATTAAGAACGTCGAACAACAATTTAAGTACACGGAGCCAACAATATGCATGAACCCAACCTGTTCGAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTTGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTAATTCTCCGCCATGAAATGGTCGAACGTGCTAGGGCTGGAGACACCGTCATCTTCACGGGTACAGTAGTTGTCATACCAGACATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGGGAAGCTTCAGAGCGAAAAAATTCTGCCGTTGGACATGAAGGAATGAGGGGTCTACGAGCCCTAGGAGTGAGGGACTTGTCCTACCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGGATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAGTTCACCACTGAAGAGCTTGATGAAGTTCAAAGAATGAGGAATACCCCTGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATTCTGCTAATGCTGTTAGGCGGTGTCCACAAGTTAACCCATGAAGGAATTAACCTTCGAGGTGATATCAATGTCTGTATAGTAGGAGATCCAAGTTGTGCAAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACGTCTGGAAAATCTTCTTCTGCTGCTGGATTAACTGCAACTGTAGCCAAAGAGCCAGAAACAGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACGAAAGCCGGAATACAGGCAACACTAAATGCCAGGACGTCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAATCTAAACCACTAAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCACATTGCACATCACATTGTGAGAGTACACCAGAAGCATGAAGACGCTCTTTCTCCTGCATTTACCACTGCTGAGTTGAAGCGTTATATTGCATATGCAAAAACTCTAAAACCTAAGTTAAGTTTAGAAGCCAGAAAAGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGAAGTAGGGTTGCTTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGCTGTCCGAAGCAATTGCACGAAGTTATTTGGAGACTTTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACCTTACTGAAAACTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGAGGTGGAGATGGTGATAATAATGTAGACAATAGGCCTCATGAGGTTGATGCTGAACCTAGGAATGGTGCGACAGAGCCAACTTCTGGAAATGGTGGTTCTGGCAGTCAACATGAGAAGAAGAAACTTCTCCTGAGTGATGAATATTTTCAGAGGGTTACCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATCTGTGATGCAAGAAGGAACTGAGCTGGCGGGAATGAGGCAGAGAGATCTGATTCAATGGTATGTGGCTCAGCAGAACGAGAAGAATAGCTATAGCTCCATGGAGGAGGCAAAAAAAGAAGTTAAAACAATTAGAAGTATTATTGAGAGTTTGATAGTAAGGGAAGGCCATTTGATAGTTGTAGATGACGGGAGGCCAGTAGATGGCGGGGTTGAAGGCGAACCATCGTTAGTTAAGGATAACAGGATTTTAGCTGTGGCTCCCAATTATGTCGTCGATTGA | 4038 | 47.5 | MAKDREKRMYVGVFFSYAAELKLFLSALLLLCALATLLQFLPSRFTLSIADLRSCSAARDSPPPPPPPSSLSATLRSSVPPPTLIPSPPTDQLLPNGVLRRAFHPYGAAAYNFITMGAYRGGLHNFAIVGLASKPLHVFGRPTFQCQWIPRLHPSSPINASAFKILPDWGYGRVYTVVVVNCTFSHPVNADNQGGKLVLYASTSGGGDRDINLTDTIEVLTETPGGMNASLFTSKPKYDYLYCGSSLYGNLSPQRVREWLAYHIRLFGARSHFVIHDAGGVHEEVLEVLKPWMELGYVTLQDIREEERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDVDEFIFVPPKNTIKSVLDSLSEYSQFTIEQMPMNSKTCLTEDAGRTYRKWGFEKLVYKDVKRGIRRDRKYAVQPRMVYATGVHMSENVAGKSTHKTDRIIKYFHYHGTIAQRREPCRSLSNETQLTLDNTPHVLDTTMRLVAPAVKRFELKMIGTSIEKEEMGGVGIPPKQKRHTGEDMESHGVGNYFVDEKSVLVENIFFDFLKSFRLVGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMRSNDLLHVAIADEYLRFEPYLKNACKRFVMEHNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRDFDIRNRKKDADEDNQQFTTEELDEVQRMRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTVESSEIDLSEFQEETNGGGDGDNNVDNRPHEVDAEPRNGATEPTSGNGGSGSQHEKKKLLLSDEYFQRVTQALVMRLRQHEESVMQEGTELAGMRQRDLIQWYVAQQNEKNSYSSMEEAKKEVKTIRSIIESLIVREGHLIVVDDGRPVDGGVEGEPSLVKDNRILAVAPNYVVD | 1345 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 39056 | 49096 | - | CmaCh07G000040.1 | Cma07g00004 | 297319 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00004 | 1345 | Pfam | Glycosyltransferase family 92 | 239 | 450 | IPR008166 | - | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 593 | 605 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 635 | 647 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 685 | 702 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 738 | 749 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 797 | 818 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cma07g00004 | 1345 | MobiDBLite | consensus disorder prediction | 1179 | 1225 | - | - | |
| Cma07g00004 | 1345 | Pfam | MCM N-terminal domain | 537 | 631 | IPR027925 | - | |
| Cma07g00004 | 1345 | ProSitePatterns | MCM family signature. | 971 | 979 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cma07g00004 | 1345 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 528 | 1297 | - | - | |
| Cma07g00004 | 1345 | ProSiteProfiles | MCM family domain profile. | 862 | 1068 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | CDD | MCM6 | 865 | 1170 | - | - | |
| Cma07g00004 | 1345 | Gene3D | - | 665 | 716 | - | - | |
| Cma07g00004 | 1345 | Pfam | MCM P-loop domain | 850 | 1072 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | Pfam | MCM OB domain | 638 | 766 | IPR033762 | - | |
| Cma07g00004 | 1345 | Gene3D | - | 526 | 634 | - | - | |
| Cma07g00004 | 1345 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 528 | 1297 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 872 | 1168 | IPR027417 | - | |
| Cma07g00004 | 1345 | Pfam | MCM AAA-lid domain | 1087 | 1170 | IPR041562 | - | |
| Cma07g00004 | 1345 | SMART | mcm | 634 | 1173 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | Gene3D | - | 638 | 766 | IPR012340 | - | |
| Cma07g00004 | 1345 | Gene3D | - | 840 | 1176 | IPR027417 | - | |
| Cma07g00004 | 1345 | Coils | Coil | 1286 | 1306 | - | - | |
| Cma07g00004 | 1345 | Gene3D | - | 1224 | 1345 | - | - | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 991 | 1004 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 903 | 918 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 1042 | 1050 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 963 | 977 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 1015 | 1027 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma07g00004 | 1345 | MobiDBLite | consensus disorder prediction | 57 | 78 | - | - | |
| Cma07g00004 | 1345 | Pfam | MCM6 C-terminal winged-helix domain | 1228 | 1344 | IPR041024 | - | |
| Cma07g00004 | 1345 | SUPERFAMILY | Nucleic acid-binding proteins | 538 | 768 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g02054 | Cma-Chr1:13045384 | Cma07g00004 | Cma-Chr7:39056 | 6.39E-147 | dispersed | |
| Cma07g00004 | Cma-Chr7:39056 | Cma19g00684 | Cma-Chr19:7093951 | 1.38E-111 | dispersed | |
| Cma03g01508 | Cma-Chr3:9387033 | Cma07g00004 | Cma-Chr7:39056 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00004 | K02542 | - | csv:101219775 | 1485.32 |