Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00004 ATGGCAAAAGACCGAGAAAAGAGGATGTATGTCGGAGTTTTTTTTAGCTATGCTGCGGAACTCAAGCTTTTTCTTTCCGCTCTCCTCCTTCTCTGTGCTCTCGCTACTCTCCTCCAGTTCCTTCCTTCTCGTTTCACGCTCTCTATCGCAGATCTCCGTTCCTGCTCCGCCGCCCGAGATTCCCCCCCTCCTCCTCCTCCACCTTCTTCTCTATCAGCAACACTCCGTTCTTCTGTACCCCCTCCAACTCTCATCCCCTCCCCTCCAACAGATCAGCTGCTTCCCAATGGCGTTCTCCGCCGCGCTTTTCACCCTTACGGTGCTGCTGCTTATAACTTCATTACTATGGGTGCTTACAGAGGCGGCCTCCACAACTTTGCCATTGTTGGTTTAGCCTCCAAGCCTCTTCACGTCTTTGGGCGTCCCACTTTCCAATGCCAGTGGATTCCTCGCCTCCACCCCTCTAGTCCCATCAACGCCTCCGCCTTCAAGATCCTTCCCGACTGGGGCTACGGTCGCGTTTACACCGTTGTCGTCGTCAATTGCACTTTCTCTCACCCTGTTAATGCCGACAACCAGGGTGGAAAATTGGTTCTCTATGCCTCCACTTCCGGTGGCGGAGATCGCGACATCAACCTTACCGACACGATTGAGGTGCTAACAGAAACCCCCGGTGGAATGAACGCTTCCCTTTTCACATCGAAGCCCAAATATGACTATCTCTACTGTGGGTCGTCCCTGTATGGGAACTTGAGCCCCCAGAGAGTGAGAGAGTGGTTGGCATACCATATCAGGCTATTCGGGGCCAGATCCCACTTTGTAATACATGATGCGGGCGGGGTTCATGAGGAGGTGCTGGAAGTTTTAAAGCCATGGATGGAATTGGGGTATGTGACATTGCAGGACATCAGGGAGGAGGAAAGGTTCGATGGATACTATCACAACCAATTCATGGTGGTGAATGACTGTTTGCATCGGTACAAGTTTATGGCCAAGTGGATGTTCTTCTTCGACGTGGATGAGTTCATCTTCGTGCCGCCGAAGAACACCATAAAATCAGTTCTGGATTCGCTTTCAGAGTACTCCCAGTTTACAATTGAGCAGATGCCCATGAACAGCAAGACGTGTCTGACAGAGGATGCGGGGAGAACCTACAGGAAGTGGGGGTTTGAGAAGCTGGTATACAAGGATGTGAAAAGGGGAATAAGGAGGGACAGGAAGTACGCAGTGCAGCCGCGGATGGTGTATGCGACGGGGGTGCACATGTCGGAGAACGTAGCCGGGAAGTCCACACACAAGACGGACAGGATCATAAAATACTTCCATTACCATGGCACCATTGCGCAGAGGAGGGAGCCCTGCCGCTCCCTTTCCAATGAAACCCAGCTTACTCTCGACAACACCCCCCATGTGTTGGACACCACCATGCGCCTCGTCGCCCCCGCCGTCAAGAGATTCGAGCTCAAAATGATCGGTACCAGTATAGAGAAAGAGGAGATGGGTGGTGTCGGCATCCCACCCAAACAGAAGCGACACACTGGTGAAGATATGGAGAGCCATGGAGTTGGTAATTATTTCGTGGATGAGAAGTCTGTTCTTGTCGAAAACATTTTCTTCGACTTCCTCAAGAGTTTTCGCCTCGTTGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTCGCTCACCTTATGCGCTCCAATGATCTTCTCCACGTAGCAATCGCCGACGAATATCTCAGGTTTGAACCATACCTCAAGAACGCTTGCAAGCGATTCGTAATGGAGCATAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCCGTTTCTAAAAGGTTGAGAGAATTGACCACTGCAGAAATTGGGAAATTAGTATCCGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGGAATGTTATTAAGAACGTCGAACAACAATTTAAGTACACGGAGCCAACAATATGCATGAACCCAACCTGTTCGAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTTGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTAATTCTCCGCCATGAAATGGTCGAACGTGCTAGGGCTGGAGACACCGTCATCTTCACGGGTACAGTAGTTGTCATACCAGACATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGGGAAGCTTCAGAGCGAAAAAATTCTGCCGTTGGACATGAAGGAATGAGGGGTCTACGAGCCCTAGGAGTGAGGGACTTGTCCTACCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGGATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAGTTCACCACTGAAGAGCTTGATGAAGTTCAAAGAATGAGGAATACCCCTGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATTCTGCTAATGCTGTTAGGCGGTGTCCACAAGTTAACCCATGAAGGAATTAACCTTCGAGGTGATATCAATGTCTGTATAGTAGGAGATCCAAGTTGTGCAAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACGTCTGGAAAATCTTCTTCTGCTGCTGGATTAACTGCAACTGTAGCCAAAGAGCCAGAAACAGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACGAAAGCCGGAATACAGGCAACACTAAATGCCAGGACGTCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAATCTAAACCACTAAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCACATTGCACATCACATTGTGAGAGTACACCAGAAGCATGAAGACGCTCTTTCTCCTGCATTTACCACTGCTGAGTTGAAGCGTTATATTGCATATGCAAAAACTCTAAAACCTAAGTTAAGTTTAGAAGCCAGAAAAGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGAAGTAGGGTTGCTTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGCTGTCCGAAGCAATTGCACGAAGTTATTTGGAGACTTTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACCTTACTGAAAACTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGAGGTGGAGATGGTGATAATAATGTAGACAATAGGCCTCATGAGGTTGATGCTGAACCTAGGAATGGTGCGACAGAGCCAACTTCTGGAAATGGTGGTTCTGGCAGTCAACATGAGAAGAAGAAACTTCTCCTGAGTGATGAATATTTTCAGAGGGTTACCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATCTGTGATGCAAGAAGGAACTGAGCTGGCGGGAATGAGGCAGAGAGATCTGATTCAATGGTATGTGGCTCAGCAGAACGAGAAGAATAGCTATAGCTCCATGGAGGAGGCAAAAAAAGAAGTTAAAACAATTAGAAGTATTATTGAGAGTTTGATAGTAAGGGAAGGCCATTTGATAGTTGTAGATGACGGGAGGCCAGTAGATGGCGGGGTTGAAGGCGAACCATCGTTAGTTAAGGATAACAGGATTTTAGCTGTGGCTCCCAATTATGTCGTCGATTGA 4038 47.5 MAKDREKRMYVGVFFSYAAELKLFLSALLLLCALATLLQFLPSRFTLSIADLRSCSAARDSPPPPPPPSSLSATLRSSVPPPTLIPSPPTDQLLPNGVLRRAFHPYGAAAYNFITMGAYRGGLHNFAIVGLASKPLHVFGRPTFQCQWIPRLHPSSPINASAFKILPDWGYGRVYTVVVVNCTFSHPVNADNQGGKLVLYASTSGGGDRDINLTDTIEVLTETPGGMNASLFTSKPKYDYLYCGSSLYGNLSPQRVREWLAYHIRLFGARSHFVIHDAGGVHEEVLEVLKPWMELGYVTLQDIREEERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDVDEFIFVPPKNTIKSVLDSLSEYSQFTIEQMPMNSKTCLTEDAGRTYRKWGFEKLVYKDVKRGIRRDRKYAVQPRMVYATGVHMSENVAGKSTHKTDRIIKYFHYHGTIAQRREPCRSLSNETQLTLDNTPHVLDTTMRLVAPAVKRFELKMIGTSIEKEEMGGVGIPPKQKRHTGEDMESHGVGNYFVDEKSVLVENIFFDFLKSFRLVGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMRSNDLLHVAIADEYLRFEPYLKNACKRFVMEHNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRDFDIRNRKKDADEDNQQFTTEELDEVQRMRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTVESSEIDLSEFQEETNGGGDGDNNVDNRPHEVDAEPRNGATEPTSGNGGSGSQHEKKKLLLSDEYFQRVTQALVMRLRQHEESVMQEGTELAGMRQRDLIQWYVAQQNEKNSYSSMEEAKKEVKTIRSIIESLIVREGHLIVVDDGRPVDGGVEGEPSLVKDNRILAVAPNYVVD 1345
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 39056 49096 - CmaCh07G000040.1 Cma07g00004 297319
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00004 1345 Pfam Glycosyltransferase family 92 239 450 IPR008166 -
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 593 605 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 635 647 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 685 702 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 738 749 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 797 818 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cma07g00004 1345 MobiDBLite consensus disorder prediction 1179 1225 - -
Cma07g00004 1345 Pfam MCM N-terminal domain 537 631 IPR027925 -
Cma07g00004 1345 ProSitePatterns MCM family signature. 971 979 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma07g00004 1345 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 528 1297 - -
Cma07g00004 1345 ProSiteProfiles MCM family domain profile. 862 1068 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 CDD MCM6 865 1170 - -
Cma07g00004 1345 Gene3D - 665 716 - -
Cma07g00004 1345 Pfam MCM P-loop domain 850 1072 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 Pfam MCM OB domain 638 766 IPR033762 -
Cma07g00004 1345 Gene3D - 526 634 - -
Cma07g00004 1345 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 528 1297 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 872 1168 IPR027417 -
Cma07g00004 1345 Pfam MCM AAA-lid domain 1087 1170 IPR041562 -
Cma07g00004 1345 SMART mcm 634 1173 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 Gene3D - 638 766 IPR012340 -
Cma07g00004 1345 Gene3D - 840 1176 IPR027417 -
Cma07g00004 1345 Coils Coil 1286 1306 - -
Cma07g00004 1345 Gene3D - 1224 1345 - -
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein family signature 991 1004 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein family signature 903 918 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1042 1050 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein family signature 963 977 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1015 1027 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00004 1345 MobiDBLite consensus disorder prediction 57 78 - -
Cma07g00004 1345 Pfam MCM6 C-terminal winged-helix domain 1228 1344 IPR041024 -
Cma07g00004 1345 SUPERFAMILY Nucleic acid-binding proteins 538 768 IPR012340 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02054 Cma-Chr1:13045384 Cma07g00004 Cma-Chr7:39056 6.39E-147 dispersed
Cma07g00004 Cma-Chr7:39056 Cma19g00684 Cma-Chr19:7093951 1.38E-111 dispersed
Cma03g01508 Cma-Chr3:9387033 Cma07g00004 Cma-Chr7:39056 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00004 K02542 - csv:101219775 1485.32