Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00020 ATGGGCAGAGGAAAAATCGCGATCAGGAGAATCGAAAATCGGACGACAAGGCAGGTTACGTTCTCTAAGCGGCGAGCCGGGCTGTTCAAGAAGACTCATGAACTCTCCGTTCTGTGTGACGCACAGATCGCCCTCATCGTCTTCTCCAGTAACGGCAAGTTGTTTGAATACTGCAGCCAGGCAACCTGCAGCATGGATCAAATAATCAGGCGCTACCAGATTGCCATCGGGAACCCTATTCCGGACCAGAATATGAACGACCCGGAAGAATTGGAGAGGCTGTTGCGGATTATGAGAAAAGACACAGACGAGCTTCAGCTGAGCTTGCAGCGCTACACGGCGGAGGATTTGAGCACTTTCCAGCTTCGCGATCTCGACGAAATCGAGAACCGTCTCCAAACCTCCCTCAACAGAGTTCGAGCTCGAAAGTCAGAGGTGTTACAGCAGCAAGTGGAAAACCTGCGGAGGAAGGAGAAAATGCTGGAGGATGAAAATGAACAAATCTACCATTTGATAAAAGAGCAGCAGATGGCGATGGAGGAGCAGCAGCAGGTAGCGGCGGCGATGATGATGCAGAAACGAAGAAGCGAAGAGGAAGAGATGAGAATTAGGAGGCCGGGAGATCATCATCAGCAGCAGCAGCATCAGCAGCAGCATCATCATCATCATCATCATGGCGTTGAAGATGAAGCAGTTGTATGTATGGAAGGCGATGATGGTGATCATGGCGATGCTTTCGGGTTCAGTAATCCTCACATTATCCATCCCCACCTTCAGCTTCAGCTTCATCCTCACGAGCCCAACAGCGTTCTTCAGCTGGGCGGCCCACTCCCTCCTCCTCCGCCGCCCTTCCTCCACCCCTACCGCCTTCAGCCCTTTCAGCCCAACCTCCATTCCTCCACTACTTACGCTACCCCTTGA 921 52.23 MGRGKIAIRRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCSQATCSMDQIIRRYQIAIGNPIPDQNMNDPEELERLLRIMRKDTDELQLSLQRYTAEDLSTFQLRDLDEIENRLQTSLNRVRARKSEVLQQQVENLRRKEKMLEDENEQIYHLIKEQQMAMEEQQQVAAAMMMQKRRSEEEEMRIRRPGDHHQQQQHQQQHHHHHHHGVEDEAVVCMEGDDGDHGDAFGFSNPHIIHPHLQLQLHPHEPNSVLQLGGPLPPPPPPFLHPYRLQPFQPNLHSSTTYATP 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 140465 142016 + CmaCh07G000200.1 Cma07g00020 297335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00020 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma07g00020 306 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 200 IPR031050 GO:0005634|GO:0048316
Cma07g00020 306 Coils Coil 125 174 - -
Cma07g00020 306 MobiDBLite consensus disorder prediction 192 227 - -
Cma07g00020 306 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma07g00020 306 MobiDBLite consensus disorder prediction 273 289 - -
Cma07g00020 306 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma07g00020 306 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma07g00020 306 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma07g00020 306 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma07g00020 306 MobiDBLite consensus disorder prediction 267 306 - -
Cma07g00020 306 Coils Coil 179 199 - -
Cma07g00020 306 MobiDBLite consensus disorder prediction 192 214 - -
Cma07g00020 306 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma07g00020 306 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma07g00020 306 PANTHER MADS BOX PROTEIN 1 200 - -
Cma07g00020 306 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Cma07g00020 306 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Cma07g00020 306 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma07g00020 306 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00020 Cma-Chr7:140465 Cma01g00424 Cma-Chr1:2130905 4.25E-43 dispersed
Cma03g01493 Cma-Chr3:9300438 Cma07g00020 Cma-Chr7:140465 1.37E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35309 PF01486 K-box 3.70E-16 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00020 - - cmos:111433644 464.151