Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00020 | ATGGGCAGAGGAAAAATCGCGATCAGGAGAATCGAAAATCGGACGACAAGGCAGGTTACGTTCTCTAAGCGGCGAGCCGGGCTGTTCAAGAAGACTCATGAACTCTCCGTTCTGTGTGACGCACAGATCGCCCTCATCGTCTTCTCCAGTAACGGCAAGTTGTTTGAATACTGCAGCCAGGCAACCTGCAGCATGGATCAAATAATCAGGCGCTACCAGATTGCCATCGGGAACCCTATTCCGGACCAGAATATGAACGACCCGGAAGAATTGGAGAGGCTGTTGCGGATTATGAGAAAAGACACAGACGAGCTTCAGCTGAGCTTGCAGCGCTACACGGCGGAGGATTTGAGCACTTTCCAGCTTCGCGATCTCGACGAAATCGAGAACCGTCTCCAAACCTCCCTCAACAGAGTTCGAGCTCGAAAGTCAGAGGTGTTACAGCAGCAAGTGGAAAACCTGCGGAGGAAGGAGAAAATGCTGGAGGATGAAAATGAACAAATCTACCATTTGATAAAAGAGCAGCAGATGGCGATGGAGGAGCAGCAGCAGGTAGCGGCGGCGATGATGATGCAGAAACGAAGAAGCGAAGAGGAAGAGATGAGAATTAGGAGGCCGGGAGATCATCATCAGCAGCAGCAGCATCAGCAGCAGCATCATCATCATCATCATCATGGCGTTGAAGATGAAGCAGTTGTATGTATGGAAGGCGATGATGGTGATCATGGCGATGCTTTCGGGTTCAGTAATCCTCACATTATCCATCCCCACCTTCAGCTTCAGCTTCATCCTCACGAGCCCAACAGCGTTCTTCAGCTGGGCGGCCCACTCCCTCCTCCTCCGCCGCCCTTCCTCCACCCCTACCGCCTTCAGCCCTTTCAGCCCAACCTCCATTCCTCCACTACTTACGCTACCCCTTGA | 921 | 52.23 | MGRGKIAIRRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCSQATCSMDQIIRRYQIAIGNPIPDQNMNDPEELERLLRIMRKDTDELQLSLQRYTAEDLSTFQLRDLDEIENRLQTSLNRVRARKSEVLQQQVENLRRKEKMLEDENEQIYHLIKEQQMAMEEQQQVAAAMMMQKRRSEEEEMRIRRPGDHHQQQQHQQQHHHHHHHGVEDEAVVCMEGDDGDHGDAFGFSNPHIIHPHLQLQLHPHEPNSVLQLGGPLPPPPPPFLHPYRLQPFQPNLHSSTTYATP | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 140465 | 142016 | + | CmaCh07G000200.1 | Cma07g00020 | 297335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00020 | 306 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cma07g00020 | 306 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR | 1 | 200 | IPR031050 | GO:0005634|GO:0048316 | |
Cma07g00020 | 306 | Coils | Coil | 125 | 174 | - | - | |
Cma07g00020 | 306 | MobiDBLite | consensus disorder prediction | 192 | 227 | - | - | |
Cma07g00020 | 306 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cma07g00020 | 306 | MobiDBLite | consensus disorder prediction | 273 | 289 | - | - | |
Cma07g00020 | 306 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cma07g00020 | 306 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cma07g00020 | 306 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cma07g00020 | 306 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cma07g00020 | 306 | MobiDBLite | consensus disorder prediction | 267 | 306 | - | - | |
Cma07g00020 | 306 | Coils | Coil | 179 | 199 | - | - | |
Cma07g00020 | 306 | MobiDBLite | consensus disorder prediction | 192 | 214 | - | - | |
Cma07g00020 | 306 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cma07g00020 | 306 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma07g00020 | 306 | PANTHER | MADS BOX PROTEIN | 1 | 200 | - | - | |
Cma07g00020 | 306 | Gene3D | - | 13 | 89 | IPR036879 | GO:0003677|GO:0046983 | |
Cma07g00020 | 306 | CDD | MADS_MEF2_like | 2 | 73 | IPR033896 | GO:0000977|GO:0045944 | |
Cma07g00020 | 306 | Pfam | K-box region | 87 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma07g00020 | 306 | SUPERFAMILY | SRF-like | 2 | 86 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00020 | Cma-Chr7:140465 | Cma01g00424 | Cma-Chr1:2130905 | 4.25E-43 | dispersed | |
Cma03g01493 | Cma-Chr3:9300438 | Cma07g00020 | Cma-Chr7:140465 | 1.37E-130 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35309 | PF01486 | K-box | 3.70E-16 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00020 | - | - | cmos:111433644 | 464.151 |