Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00030 ATGGCGCCGGGCCTCAGAGACCTGCAGCTCACCCAGGTCGCCCAGCGTCCCTCGGCTATTTCTGCGGCTCCTGAGCTTTCGGAGGATCTCGAGGATGTGCGGTTGCTTGATTCCTACGAGAGCCCGGAGGAGAATTTGGGCGAAATTGGGGAAAGTATGAGGAGGGTTCAGGTCACAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTCGAAGCGGCTCTCAGGGGGCTTAATGGCGTTTTGACGGCTTCCGTTGCTTTGCTTCAGAACAGAGCTGACGTGGTTTTCGACCCCAGCTTCGTTAAGGTTGAGGACATCAAGGAAGCGATAGAAGATGCTGGATTTGAGGCTGAGATTATACCTGAAACCAGTTCAGTTGGAAAGAAGAAGTCCAATGGAACGCTGGTGGGTCAATTCAGCATAGGAGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAAGCATTTTAAAAGATCTTCCTGGCGTTAGGAGAGCGGTAGTTGCTTTGGCCACATCATTGGGAGAGGTTGAATATGATCCAACAATAACCACTAAAGACGACATAATTAATGGTATTGAGGATGCTGGATTTGAAGCTTCACTTGTACAGAGCAGTGAGCAAGACCAAATTTTTGTAGCGGTTTCCGGCATTGCTGGCGAGGTTGATGTACAGGTTTTGGAAGTCATACTCAGCAACTTGAAAGGGGTGAGGCGGTTCCTCTTCAATAGGACATCAGGAAAACTGGAGGTTGTTTTTGACCCACAACTTGTGGGTCCCAGATCCTTGGTGGATGAGATTGAGGGAAGAAGCAACAAAAAATTTAAGCTGCATGTTACCAGCCCTTACAGTAGGTTAACTTCTAAAGATGCTGAAGAAGCTACAAACATGTTTCGCCTTTTTGTCTCCAGTCTGTCTCTCAGTGTACTCATCTTTCTCCTACGAGTAGTATGTCCTCATATTCCTTTAATCTACTCATTGTTACTCCGGCGCTGTGGGCCGTTCATCATGGACGATTGGTTGAAGTGGGCATTGGTGACTGTTGTGCAATTTATCATTGGAAAGCGCTTCTATGTCGCAGCTGCTAGAGCTCTTCGAAATGGTTCGACGAACATGGATGTGTTGGTTGCTTTGGGTACCACGGCCTCTTACACTTATTCTGTTTGTGCACTTCTATATGGTGCAGTCACCGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTACTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCCACTGCTCTATTGCTTATCCAAGATAAAGGTGGGAATCTGATAGAAGAGAGGGAAATAAATGCTCTGCTAATTCAACCTGGCGATGTGTTGAAAGTTGTTCCTGGTGCAAAGGTTCCAGCAGATGGCGTTGTTGTTTGGGGTTCGAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTATACCTGTTCTGAAGGAGCTTAACTCGCCTGTTATTGGGGGTACAATTAATCTTCATGGAGCCCTTCACATTCAAGCAACCAAAGTAGGATCTGATGCTGTTCTGAACCAGATTATTAGTTTGGTTGAGTCGGCACAGATGTCTAAAGCCCCAATTCAGAAATTTGCTGATTTTGTAGCAAGCATATTCGTTCCAACAGTTGTTGCTATGGCATTGTGCACATTATTTGGTTGGTACGTTGGAGGAATTCTTGGGGCTTATCCAGCTGAATGGCTCCCAGACAATGGGAATTACTTTGTGTTTTCGCTCATGTTTGCCATAGCAGTGGTGGTGATTGCATGCCCTTGTGCGCTAGGCTTGGCAACACCGACTGCTGTCATGGTTGCAACAGGGGTTGGTGCCAGCAATGGTATCTTGATCAAAGGAGGTGATGCTTTGGAGAGGGCCCAGAAGGTTAAGTACGTGATATTTGATAAAACAGGCACACTAACCCAAGGGAAAGCGTCGGTTACCACTGCCAAAGTCTTCACTGAAATTTCTCGAGGAGATTTTCTTAAGCTGGTTGCTTCTGCAGAGGCTAGCAGCGAACACCCGTTGGGAAAAGCTATAGTCGACTATGCACGTCATTTCCATTTCTTCGACGAGCCTTCTACGACCCAAAATGTGGGAAACCAAAGTAAAGAAGCTTCTGGATGGCTTTTCGATGTCACGGAGTTCTCTGCATTGCCAGGCAAAGGAATCCAGTGCTTTGCAGAGGGGAAAAGGATTCTTGTTGGGAACAGGAAGTTGATGAATGAAAGTGGAATTTCCATAGCGCCTCATGTGGATAATTTCGTTATTGAGCTCGAAGAGAATGCAAAGACTGGTGTTCTTGTTGCATATGATGATAGGTTAATTGGAGTTTTGGGAATAGCAGATCCACTGAAGAGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTGAAAATGGGAGTTGCTCCAGTCATGGTTACAGGGGACAATTGGAGAACGGCTCAGGCTGTCGCCAAAGAGCTTGGCATACAAGATGTGAGGGCAGAAGTAATGCCAGCAGGAAAAGCAGAAGTCATCCAAAACTTCCAGAAGGATGGGAGCATAGTTGCGATGGTAGGCGATGGCATCAACGACTCGCCTGCTCTAGCTACTTCTGATATCGGAATTGCAATTGGTGCAGGGACTGATATTGCCATTGAGGCAGCCGACTTCGTGTTGATGAGAAATAATTTAGAAGACGTAATTACAGCCATCGATCTCTCGAGGAAGACATTCAATCGGATCCGATTGAATTACATGTTTGCAATGGCGTACAATGTGATAGCAATTCCTGTTGCTGCCGGACTATTCTTTCCATCTTTGGGGGTTAAGTTGCCTCCATGGGCGGCTGGTGCGTGCATGGCTTTGTCGTCGGTCAGTGTTGTTTGCTCGTCTTTACTTCTTAGGAGATACAAAAGACCAAGACTCACAACAATTCTTGAAATCACTGTAGAATAG 3018 46.06 MAPGLRDLQLTQVAQRPSAISAAPELSEDLEDVRLLDSYESPEENLGEIGESMRRVQVTVSGMTCAACSNSVEAALRGLNGVLTASVALLQNRADVVFDPSFVKVEDIKEAIEDAGFEAEIIPETSSVGKKKSNGTLVGQFSIGGMTCAACVNSVESILKDLPGVRRAVVALATSLGEVEYDPTITTKDDIINGIEDAGFEASLVQSSEQDQIFVAVSGIAGEVDVQVLEVILSNLKGVRRFLFNRTSGKLEVVFDPQLVGPRSLVDEIEGRSNKKFKLHVTSPYSRLTSKDAEEATNMFRLFVSSLSLSVLIFLLRVVCPHIPLIYSLLLRRCGPFIMDDWLKWALVTVVQFIIGKRFYVAAARALRNGSTNMDVLVALGTTASYTYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIQDKGGNLIEEREINALLIQPGDVLKVVPGAKVPADGVVVWGSSYVNESMVTGESIPVLKELNSPVIGGTINLHGALHIQATKVGSDAVLNQIISLVESAQMSKAPIQKFADFVASIFVPTVVAMALCTLFGWYVGGILGAYPAEWLPDNGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGILIKGGDALERAQKVKYVIFDKTGTLTQGKASVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAIVDYARHFHFFDEPSTTQNVGNQSKEASGWLFDVTEFSALPGKGIQCFAEGKRILVGNRKLMNESGISIAPHVDNFVIELEENAKTGVLVAYDDRLIGVLGIADPLKREAAVVVEGLVKMGVAPVMVTGDNWRTAQAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSIVAMVGDGINDSPALATSDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYMFAMAYNVIAIPVAAGLFFPSLGVKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 191702 196349 + CmaCh07G000300.1 Cma07g00030 297345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00030 1005 Gene3D - 667 757 IPR023299 GO:0000166
Cma07g00030 1005 Gene3D - 758 810 IPR023299 GO:0000166
Cma07g00030 1005 ProSiteProfiles Heavy-metal-associated domain profile. 138 204 IPR006121 GO:0046872
Cma07g00030 1005 Gene3D - 140 211 - -
Cma07g00030 1005 CDD HMA 57 120 IPR006121 GO:0046872
Cma07g00030 1005 SUPERFAMILY Calcium ATPase, transmembrane domain M 397 967 IPR023298 -
Cma07g00030 1005 PANTHER HEAVY METAL P-TYPE ATPASE 21 998 - -
Cma07g00030 1005 ProSiteProfiles Heavy-metal-associated domain profile. 55 121 IPR006121 GO:0046872
Cma07g00030 1005 SUPERFAMILY Calcium ATPase, transduction domain A 460 546 IPR008250 -
Cma07g00030 1005 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 413 689 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00030 1005 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 739 960 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00030 1005 ProSitePatterns Heavy-metal-associated domain. 60 90 IPR017969 GO:0046872
Cma07g00030 1005 SUPERFAMILY HMA, heavy metal-associated domain 135 208 IPR036163 GO:0046872
Cma07g00030 1005 CDD P-type_ATPase_Cu-like 301 975 - -
Cma07g00030 1005 Gene3D - 627 936 IPR023214 -
Cma07g00030 1005 PRINTS H+-transporting ATPase (proton pump) signature 851 867 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00030 1005 PRINTS H+-transporting ATPase (proton pump) signature 879 895 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00030 1005 PRINTS H+-transporting ATPase (proton pump) signature 910 935 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00030 1005 Pfam Heavy-metal-associated domain 141 201 IPR006121 GO:0046872
Cma07g00030 1005 Pfam Heavy-metal-associated domain 58 118 IPR006121 GO:0046872
Cma07g00030 1005 SUPERFAMILY HMA, heavy metal-associated domain 212 271 IPR036163 GO:0046872
Cma07g00030 1005 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 374 988 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma07g00030 1005 SUPERFAMILY HAD-like 659 985 IPR036412 -
Cma07g00030 1005 Pfam E1-E2 ATPase 442 638 - -
Cma07g00030 1005 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Cma07g00030 1005 PRINTS P-type cation-transporting ATPase superfamily signature 660 674 - -
Cma07g00030 1005 PRINTS P-type cation-transporting ATPase superfamily signature 804 815 - -
Cma07g00030 1005 PRINTS P-type cation-transporting ATPase superfamily signature 826 836 - -
Cma07g00030 1005 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Cma07g00030 1005 PRINTS P-type cation-transporting ATPase superfamily signature 902 914 - -
Cma07g00030 1005 TIGRFAM TIGR00003: copper ion binding protein 56 119 IPR006122 GO:0005507
Cma07g00030 1005 TIGRFAM TIGR00003: copper ion binding protein 140 202 IPR006122 GO:0005507
Cma07g00030 1005 ProSiteProfiles Heavy-metal-associated domain profile. 212 270 IPR006121 GO:0046872
Cma07g00030 1005 Gene3D - 53 125 - -
Cma07g00030 1005 SFLD Haloacid Dehalogenase 642 931 - -
Cma07g00030 1005 CDD HMA 140 203 IPR006121 GO:0046872
Cma07g00030 1005 ProSitePatterns E1-E2 ATPases phosphorylation site. 662 668 IPR018303 -
Cma07g00030 1005 SFLD p-type atpase 642 931 IPR044492 -
Cma07g00030 1005 PANTHER ATP7, ISOFORM B 21 998 - -
Cma07g00030 1005 Pfam haloacid dehalogenase-like hydrolase 656 892 - -
Cma07g00030 1005 Gene3D - 428 550 - -
Cma07g00030 1005 SUPERFAMILY HMA, heavy metal-associated domain 51 123 IPR036163 GO:0046872
Cma07g00030 1005 ProSitePatterns Heavy-metal-associated domain. 143 172 IPR017969 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00222 Cma-Chr3:3337382 Cma07g00030 Cma-Chr7:191702 1.65E-14 dispersed
Cma05g00706 Cma-Chr5:3727040 Cma07g00030 Cma-Chr7:191702 4.23E-65 dispersed
Cma07g00030 Cma-Chr7:191702 Cma07g01142 Cma-Chr7:6242112 1.65E-14 dispersed
Cma03g01484 Cma-Chr3:9239119 Cma07g00030 Cma-Chr7:191702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00030 K17686 - csv:101205642 1749.18