Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00032 ATGGGGAGGAAGAAGAAGAGGGTTTCGTCTAAGGTATGGTGCTACTATTGCGACAGGGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAGCACTTCAAGTGTCATGTCTGCCATAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAGGCTGGCAGAGAATCAACAGATATTGAAATATATGGAATGCAAGGAATTCCACCTGATGTCTTGGCAGCACACTATGGAGAGGATGATGAAGAGTCTGCATCGAAGGTGGCCAAAGTGGAGATGCCACCAACTCAGATGGTTGGTGGTATGGTGCCTGGATCGCTAGGTATTATGTACCCTCCTCAACCAGGTTTAGCTGCAATGCGACCTATTTATGCTTCAACTGGACAAGCGCAGCCTACTGCCTGGCAAGTTCCACCTCGTCCCCAACCTTGGTTTCCCCCAAATTCAGCCGTTTCAATTCCCCCTCCTGCCCCATTGGGCTATGCTCAGCCGCCACTATTTCCTGTGCAGACTGCAAGGCCCCCACTCCCAGTATCTTCCACTCCTATGCTCCAGCCTCCACAAATAACGCCTCCTGGATTGCCTTCAACTACACCTTCAGTTTTGGTTTCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGATCTACCCAAAGCTCTCCTTTTCCTTCATCTTCACTTCCAACAAGCATTCCTTTGACATCTGCAGCAGAAATCAAGGGCTCATTGAGTATACATTTGGGTACTAACTCCTTTTCCACTATTTGCAATCAAGTTCCAATCATTCCAGGTGGAGTATTGAGCAATTCACACTCTTATGCCTCGGGACCAAATACAGGCGGTCCTTCCATTGGACCTCCTCCTGTAATTGCGAATAAAGCTCCTATTCAGCCATCAACAAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGTCGAATGCCATTTTAG 1125 46.93 MGRKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKAGRESTDIEIYGMQGIPPDVLAAHYGEDDEESASKVAKVEMPPTQMVGGMVPGSLGIMYPPQPGLAAMRPIYASTGQAQPTAWQVPPRPQPWFPPNSAVSIPPPAPLGYAQPPLFPVQTARPPLPVSSTPMLQPPQITPPGLPSTTPSVLVSQPLFPVVSNSHGSTQSSPFPSSSLPTSIPLTSAAEIKGSLSIHLGTNSFSTICNQVPIIPGGVLSNSHSYASGPNTGGPSIGPPPVIANKAPIQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 200514 206834 + CmaCh07G000320.1 Cma07g00032 297347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00032 374 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Cma07g00032 374 Gene3D Classic Zinc Finger 2 66 - -
Cma07g00032 374 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cma07g00032 374 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cma07g00032 374 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 374 - -
Cma07g00032 374 SMART c2h2final6 12 35 IPR013087 -
Cma07g00032 374 SMART c2h2final6 36 59 IPR013087 -
Cma07g00032 374 PANTHER ZINC FINGER PROTEIN 207 1 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01479 Cma-Chr3:9223188 Cma07g00032 Cma-Chr7:200514 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35312 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00032 - - csv:101206973 645.966