Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00049 ATGTCGCCTCTTTCTCTGATCCTCCTCCTCCTCCTCTCCCTTCCATTAGCATATTCCTATGAAACAGAGGGATCCCCTGTTCAAAGTTTTGTGGACTGTCTTCCAATTCACGCCTCACCCTCCATCCACGGTGTCATCTACACTCCTCAAAACACTTCCTTCTTGTCCATCCTTCAATCTTACAACAGAAACCTCCGATTTGAAACTCCACAAACCCCAAAGCCTGTGCTGATCATCACGCCTCTCGACGCAACCCAAGTCCAAGCCACCATCGCTTGCGCCAACCCCTTGGGGCTGCAGCTCCGAGTGAGGAGCGGCGGCCATGATTACGAGGGACTCTCCTATCAAGCTCATGTCCCTTTTGTTCTTCTCGACATGTTCAATCTTCGTAAGATTGATATTTACAAGGATGGCTATGATTACGTTGCGTGGATTGAAGCTGGTGCCATTCTGGGCGAGCTCTACCATCGCATTGCCGAATTCAGTCCAAATCTTGCGTTTCCTGGAGGGGTTTGCTTCACCCTCGGCGTTGGAGGTCATTTCAGCGGCGGTGGCTACGGGAATCTCATGAGAAAATATGGGCTTTCCGTTGATAATATTGTGGATGCTTTGTTTGTCGACGCCACTGGGGCTGTTCTTGATCGTAAGTCGATGGGGGAGGATCTTTTTTGGGCTATTAGAGGAGGTGGGGCTGCCAGTTTCGGGGTTGTTATTTCGTGGAAGATCAAATTGGTGTCAGTCCCTGAAACCGTCACGGTTTTCAACGTGAATCTGAGACCAGAACAAGGCGCACTCGATGTGGCCCATCGATGGCAGTTCGTGGCCCATAATCTGCCAGACGAATTGTTTATAAGACTAATGCATACCGTAGTGGGTTCAACAACTGAGAAAGGGGAGCTCACAGTGCAAGCTTCGTTCGTTGGTTTGTTCTTGGGAACACCCAAATCGCTCATTCCGATCATGAACAAGAATTTCCCTGAGTTGGGTCTGAAGCAAAGCGATTGCCGCGAAGTAAGATGGGTTGAATCCACCATATTTTGGTACAAGGGCCCCATAGGAAGCAACATTGATATTCTGCTTGAAAGACCCAAAAACGGATCCTATTTGTTCAAGGGCATGTCGGACTATGTGAAGAAGGCGATCTCGAAGGAAGGGATTCTGGGGATATGGCGAACCATGGTCGGATTGAATTCCACCTCATTGGCGATGCATTGGAACCCATACGGCGGAAGAATGTGGGAAATTCCAGAATCTGCAACTCCATTTCCACACAGAGCAGGGAACCTGTATTTGATTCAGTACACGTTATCGTGGATGAAACAAGGAATGGAATCCACAAACCATTACATGAACATTTCGAGGAGTTTGTACGAATACATGACTCCATTGGTGTCGAGCTCGCCCAGAGAATCGTTTTTAAATTACAGAGACCTTGGGATTGGGGCGAATCCCAGCACTCAAACAAACTACATGGTTGCTGAAGAATACGGGCGGAAGTATTTCAAGGGGAACTTTGATCGGTTGATGAAGGTGAAGACGATGGTGGATCCTCATAATTTCTTCAGAAACGAACAGAATATATTGAATGAGTCACACGCCAAATCGGAGAAACTGAATCCAATGGTCGGAGGCTTTGAAGTGGGAGCTGTTCCCTACAACCCGGACGGTTGGGGTCCGCCGGAATCGACTGCCACCCTCGCCGCTTCCTCTAACCTCCCTCTCAATGTCCCCTTTGCCCCATTCTCTCGCTCCGATAAGCTTGGTCGGATCGCGGATTGGACTCGAACAATGAATAACCCTGGTCGCCCCAAGGCTGCTTCGGATTCCGTCTTCGATTTCACTAATGACGATTCCTTCCCGGCCAATGCCGACGAGGACATGTCCTTCCGTTTGGTTGATGGAAAGCCTCCTCCGCGCCCCAAATTTGGCCCTAAATGGCGATTCAACCAGCAAAGGACACAGCTACCTCAGCGCCGTGACGAAGAAGTTGAGGCTCGAAAGCGCGAGGCTGAGAAGGAGCGGGCTCGCCGTGACCGTCTTTACAACCTCAACAGGTCTAATGTCAATGCGACCCGTCGTGAAGCTGCTGTCTTCAAATCCTCTGTGGAAATTCAACCAGAATGGAACATGCTTGATCAGATTCCCTTCTCCACTTTCTCGAAGCTGTCCTTCTCTGTTGCTGAGCCCGAAGACCTTCTTCTGTGCGGCGGGCTAGAGTTCTATGATCGAACAAACGACCGAATCACTCCCAAGAACGAGCGCCGTCTTGAGCGCTTCAAGAACCGCAACTTCTTTAAGGTAACTACTACCGACGATCCTGTCATTCGTCGTCTCGCAAATGAGGACAAAGCCACAGTTTTTGCTACCGATGCCATCCTTTCTACCCTTATGTGTGCAACGAGATCGGTTTATTCCTGGGACATTGTGGTTCAACGTGTTGGGAACAAGCTTTTCTTTGATAAGAGGGATGGGTCACAACTTGATTTGCTTGCTGTCCACGAGACCTCTCAGGAACCCTTACCAGAGGCGAAGGACGATATCAATTCAGCGTATTCACTGAGTGTCGAAGCTGCTTACATTAATCAGAACTTCTCGCAGCAAGTTTTAGTTAGGGACGGAAATAAGGTGGCCTTTGACGAGCCAAACCCATTTGCAAATGAGGGAGAGGAGGTCGCTTCAGTTGCTTACAGGTATAGGAGGTGGAAACTTGATGATGACATGTATCTTGTGGCCAGGTGCGAGGTTCAAAGTGTTATGGAGGTTAATAAGCAGAGATCATTCTTGACTTTGAATGCTCTTAATGAATTTGATCCCAAGTATTCAGGTGTCGATTGGAGGCAGAAATTGGAGACACAGAGGGGTGCTGTTTTGGCCACAGAGTTGAAGAACAATGCCAATAAATTGGCAAAATGGACAGCTCAAGCCTTATTAGCTAGCGCAGATATGATGAAGTTGGGGTATGTCTCTAGGGTTCATCCTCGTGATCACTTCAACCATGTCATCTTAGCTGTGGTTGGGTATAAACCGAAGGATTTTGCAGCTCAAATTAACTTAAATACGTCTAACATGTGGGGTATTGTCAAATCCATTGTGGATTTGTGCATGAAATTGAAGGAAGGTAAGTATGTTTTGGTTAAGGACCCATCCAAACCACAGGTTAGGATCTATGAGGTTCCTGCGGATGCATTTGAGAATGACTATGTTGAGGAGCCACTGGCTGAGGAGGACCAAGTGCAACCTCCAGGAGAAGATGAAAATGGCGCCACTGCTAATGCGGGGACTGATGATGCCGCAGAGAAGGTTGATGCTGCTCAAGCTTAA 3321 48.33 MSPLSLILLLLLSLPLAYSYETEGSPVQSFVDCLPIHASPSIHGVIYTPQNTSFLSILQSYNRNLRFETPQTPKPVLIITPLDATQVQATIACANPLGLQLRVRSGGHDYEGLSYQAHVPFVLLDMFNLRKIDIYKDGYDYVAWIEAGAILGELYHRIAEFSPNLAFPGGVCFTLGVGGHFSGGGYGNLMRKYGLSVDNIVDALFVDATGAVLDRKSMGEDLFWAIRGGGAASFGVVISWKIKLVSVPETVTVFNVNLRPEQGALDVAHRWQFVAHNLPDELFIRLMHTVVGSTTEKGELTVQASFVGLFLGTPKSLIPIMNKNFPELGLKQSDCREVRWVESTIFWYKGPIGSNIDILLERPKNGSYLFKGMSDYVKKAISKEGILGIWRTMVGLNSTSLAMHWNPYGGRMWEIPESATPFPHRAGNLYLIQYTLSWMKQGMESTNHYMNISRSLYEYMTPLVSSSPRESFLNYRDLGIGANPSTQTNYMVAEEYGRKYFKGNFDRLMKVKTMVDPHNFFRNEQNILNESHAKSEKLNPMVGGFEVGAVPYNPDGWGPPESTATLAASSNLPLNVPFAPFSRSDKLGRIADWTRTMNNPGRPKAASDSVFDFTNDDSFPANADEDMSFRLVDGKPPPRPKFGPKWRFNQQRTQLPQRRDEEVEARKREAEKERARRDRLYNLNRSNVNATRREAAVFKSSVEIQPEWNMLDQIPFSTFSKLSFSVAEPEDLLLCGGLEFYDRTNDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDAILSTLMCATRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVMEVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKDFAAQINLNTSNMWGIVKSIVDLCMKLKEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLAEEDQVQPPGEDENGATANAGTDDAAEKVDAAQA 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 296027 300207 - CmaCh07G000490.1 Cma07g00049 297364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00049 1106 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 546 1057 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cma07g00049 1106 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 543 1069 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cma07g00049 1106 MobiDBLite consensus disorder prediction 654 674 - -
Cma07g00049 1106 MobiDBLite consensus disorder prediction 628 674 - -
Cma07g00049 1106 Gene3D - 250 467 - -
Cma07g00049 1106 ProSiteProfiles PCMH-type FAD-binding domain profile. 71 247 IPR016166 GO:0071949
Cma07g00049 1106 Pfam FAD binding domain 77 213 IPR006094 GO:0050660
Cma07g00049 1106 Gene3D - 25 129 IPR016167 -
Cma07g00049 1106 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D 544 1099 - -
Cma07g00049 1106 MobiDBLite consensus disorder prediction 1069 1106 - -
Cma07g00049 1106 Pfam Berberine and berberine like 471 527 IPR012951 GO:0016491|GO:0050660
Cma07g00049 1106 Gene3D - 141 527 IPR016169 -
Cma07g00049 1106 SUPERFAMILY FAD-binding/transporter-associated domain-like 45 248 IPR036318 GO:0050660
Cma07g00049 1106 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 544 1099 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cma07g00049 1106 Coils Coil 658 678 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00049 Cma-Chr7:296027 Cma03g01459 Cma-Chr3:9116982 0 dispersed
Cma03g01461 Cma-Chr3:9122111 Cma07g00049 Cma-Chr7:296027 0 transposed
Cma13g00472 Cma-Chr13:5165011 Cma07g00049 Cma-Chr7:296027 1.10E-148 wgd
Cma18g00518 Cma-Chr18:3156693 Cma07g00049 Cma-Chr7:296027 2.86E-156 wgd
Cma03g01458 Cma-Chr3:9112585 Cma07g00049 Cma-Chr7:296027 8.95E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00049 K03251 - csv:101208923 1074.31