Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00060 | ATGGAACTTGGAAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTAAAAAGGATAATCGCTTCTGTGCAGATTGTCGAGCTTTAGATCCTAGATGGGCGTCATCAAATATTGGAGTTTTTATATGCTTGAAATGCTGTGGTGTTCACAGAAGCCTTGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGATGCCATGATAGAAATTGGAGGAAATAATTCAGCGAATGCGATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCCACCCATGAACAACGTTCAAAATTCATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCAAACTCCGACAAAAACAATGTCCAAGCAAACTTTGCTTCAAAGGTCATGAACAGTTTTCGTTCAAATTCTTCACAAAAATCACAATTGCAGAAGGGTATGGTAGAGTTTCTTGGATTATTGAAGGTGAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGTCGAGCGATCCTTATGTAGTCTTGACTCTTGGCCAACAGACTGTCCAGACAGGTATAATCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGATGCTATCTGTACCTCAATCTTTTGGAACCTTAAAGTTGCAAGTATACGACTATGACACGTTTACAGCAGACGACATAATGGGAGAAGCAGAAATTGATCTCCAGCCCTTGATAACATCAGCAATGGCATTTGGGGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCACACGATAATGCTCTCATTGGCGATAGCACCGTTAATATTGTGGATGGGAAGGTAAAGCAAGAGATATCACTCCAGCTGCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGCCTCTTGAACAATAG | 984 | 40.14 | MELGRPGSGKRRLRDLLLKKDNRFCADCRALDPRWASSNIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEIGGNNSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSNSDKNNVQANFASKVMNSFRSNSSQKSQLQKGMVEFLGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGQQTVQTGIIRSNLNPVWNEELMLSVPQSFGTLKLQVYDYDTFTADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIGDSTVNIVDGKVKQEISLQLQNVESGELDLELEWMPLEQ | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 331093 | 333845 | - | CmaCh07G000600.1 | Cma07g00060 | 297375 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00060 | 327 | Gene3D | Arf GTPase activating protein | 5 | 131 | IPR038508 | - | |
Cma07g00060 | 327 | CDD | C2_ArfGAP | 170 | 314 | - | - | |
Cma07g00060 | 327 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 10 | 127 | IPR037278 | - | |
Cma07g00060 | 327 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 10 | 138 | IPR001164 | GO:0005096 | |
Cma07g00060 | 327 | Gene3D | C2 domain | 170 | 327 | IPR035892 | - | |
Cma07g00060 | 327 | PRINTS | C2 domain signature | 187 | 199 | IPR000008 | - | |
Cma07g00060 | 327 | PRINTS | C2 domain signature | 211 | 224 | IPR000008 | - | |
Cma07g00060 | 327 | PRINTS | C2 domain signature | 232 | 240 | IPR000008 | - | |
Cma07g00060 | 327 | CDD | ArfGap | 13 | 119 | - | - | |
Cma07g00060 | 327 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 171 | 316 | IPR035892 | - | |
Cma07g00060 | 327 | SMART | arf_gap_3 | 10 | 132 | IPR001164 | GO:0005096 | |
Cma07g00060 | 327 | SMART | C2_3c | 172 | 267 | IPR000008 | - | |
Cma07g00060 | 327 | PRINTS | HIV Rev interacting protein signature | 22 | 41 | IPR001164 | GO:0005096 | |
Cma07g00060 | 327 | PRINTS | HIV Rev interacting protein signature | 41 | 58 | IPR001164 | GO:0005096 | |
Cma07g00060 | 327 | PRINTS | HIV Rev interacting protein signature | 62 | 83 | IPR001164 | GO:0005096 | |
Cma07g00060 | 327 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 3 | 327 | IPR044518 | GO:0005096|GO:0005543 | |
Cma07g00060 | 327 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 | 3 | 327 | - | - | |
Cma07g00060 | 327 | Pfam | C2 domain | 171 | 261 | IPR000008 | - | |
Cma07g00060 | 327 | Pfam | Putative GTPase activating protein for Arf | 11 | 126 | IPR001164 | GO:0005096 | |
Cma07g00060 | 327 | ProSiteProfiles | C2 domain profile. | 153 | 268 | IPR000008 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma07g00060 | Cma13g00493 | CCT | |
Cma07g00060 | Cma18g00511 | CCT | |
Cma03g01448 | Cma07g00060 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00060 | Cma-Chr7:331093 | Cma15g00820 | Cma-Chr15:4119375 | 9.87E-116 | dispersed | |
Cma13g00966 | Cma-Chr13:7538834 | Cma07g00060 | Cma-Chr7:331093 | 7.52E-27 | dispersed | |
Cma18g00074 | Cma-Chr18:329922 | Cma07g00060 | Cma-Chr7:331093 | 2.92E-40 | dispersed | |
Cma18g00093 | Cma-Chr18:430763 | Cma07g00060 | Cma-Chr7:331093 | 1.54E-27 | dispersed | |
Cma13g00493 | Cma-Chr13:5283276 | Cma07g00060 | Cma-Chr7:331093 | 0 | wgd | |
Cma18g00511 | Cma-Chr18:3056927 | Cma07g00060 | Cma-Chr7:331093 | 1.02E-172 | wgd | |
Cma03g01448 | Cma-Chr3:9065506 | Cma07g00060 | Cma-Chr7:331093 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00060 | K12486 | - | csv:101218116 | 597.43 |