Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00060 ATGGAACTTGGAAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTAAAAAGGATAATCGCTTCTGTGCAGATTGTCGAGCTTTAGATCCTAGATGGGCGTCATCAAATATTGGAGTTTTTATATGCTTGAAATGCTGTGGTGTTCACAGAAGCCTTGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGATGCCATGATAGAAATTGGAGGAAATAATTCAGCGAATGCGATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCCACCCATGAACAACGTTCAAAATTCATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCAAACTCCGACAAAAACAATGTCCAAGCAAACTTTGCTTCAAAGGTCATGAACAGTTTTCGTTCAAATTCTTCACAAAAATCACAATTGCAGAAGGGTATGGTAGAGTTTCTTGGATTATTGAAGGTGAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGTCGAGCGATCCTTATGTAGTCTTGACTCTTGGCCAACAGACTGTCCAGACAGGTATAATCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGATGCTATCTGTACCTCAATCTTTTGGAACCTTAAAGTTGCAAGTATACGACTATGACACGTTTACAGCAGACGACATAATGGGAGAAGCAGAAATTGATCTCCAGCCCTTGATAACATCAGCAATGGCATTTGGGGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCACACGATAATGCTCTCATTGGCGATAGCACCGTTAATATTGTGGATGGGAAGGTAAAGCAAGAGATATCACTCCAGCTGCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGCCTCTTGAACAATAG 984 40.14 MELGRPGSGKRRLRDLLLKKDNRFCADCRALDPRWASSNIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEIGGNNSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSNSDKNNVQANFASKVMNSFRSNSSQKSQLQKGMVEFLGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGQQTVQTGIIRSNLNPVWNEELMLSVPQSFGTLKLQVYDYDTFTADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIGDSTVNIVDGKVKQEISLQLQNVESGELDLELEWMPLEQ 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 331093 333845 - CmaCh07G000600.1 Cma07g00060 297375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00060 327 Gene3D Arf GTPase activating protein 5 131 IPR038508 -
Cma07g00060 327 CDD C2_ArfGAP 170 314 - -
Cma07g00060 327 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Cma07g00060 327 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 138 IPR001164 GO:0005096
Cma07g00060 327 Gene3D C2 domain 170 327 IPR035892 -
Cma07g00060 327 PRINTS C2 domain signature 187 199 IPR000008 -
Cma07g00060 327 PRINTS C2 domain signature 211 224 IPR000008 -
Cma07g00060 327 PRINTS C2 domain signature 232 240 IPR000008 -
Cma07g00060 327 CDD ArfGap 13 119 - -
Cma07g00060 327 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 316 IPR035892 -
Cma07g00060 327 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Cma07g00060 327 SMART C2_3c 172 267 IPR000008 -
Cma07g00060 327 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Cma07g00060 327 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Cma07g00060 327 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Cma07g00060 327 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 327 IPR044518 GO:0005096|GO:0005543
Cma07g00060 327 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 327 - -
Cma07g00060 327 Pfam C2 domain 171 261 IPR000008 -
Cma07g00060 327 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Cma07g00060 327 ProSiteProfiles C2 domain profile. 153 268 IPR000008 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00060 Cma13g00493 CCT
Cma07g00060 Cma18g00511 CCT
Cma03g01448 Cma07g00060 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00060 Cma-Chr7:331093 Cma15g00820 Cma-Chr15:4119375 9.87E-116 dispersed
Cma13g00966 Cma-Chr13:7538834 Cma07g00060 Cma-Chr7:331093 7.52E-27 dispersed
Cma18g00074 Cma-Chr18:329922 Cma07g00060 Cma-Chr7:331093 2.92E-40 dispersed
Cma18g00093 Cma-Chr18:430763 Cma07g00060 Cma-Chr7:331093 1.54E-27 dispersed
Cma13g00493 Cma-Chr13:5283276 Cma07g00060 Cma-Chr7:331093 0 wgd
Cma18g00511 Cma-Chr18:3056927 Cma07g00060 Cma-Chr7:331093 1.02E-172 wgd
Cma03g01448 Cma-Chr3:9065506 Cma07g00060 Cma-Chr7:331093 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00060 K12486 - csv:101218116 597.43