Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00062 | ATGGCCGCTCAGACACGCGGCAGGATTCTAGAAATTCTGTCCCCTTTCCTCAAACTAAGAAATCAAGAAGAAACACAGAAGACGAAAAAACGGCTACAAGACTCACAGTCATCAGCTTCAGCAGACAGAATTCCCGCTTTCCAGGTTTCACGTGGTGTTCACTACAACCCGATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATAAGCTGCAAAAGTACTCTGAATCTCAGAATAATTCTTCATCAGTCATTAATGGACTAAATCAACCCAGCATCACAACCTCAAATCAGTATTTAACACCTCTACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTATAGAAGCATCTTTTCTCCTTATGATGCTCAACCGTATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTGCAGTTGATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTGCGACGTAGACAGTCCCGTGCAAAGGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCGTCAGGTGATAAATCACACCCCAATATAAATCTTAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGAACTGA | 789 | 43.22 | MAAQTRGRILEILSPFLKLRNQEETQKTKKRLQDSQSSASADRIPAFQVSRGVHYNPMTSSVHDYSDNGEADKLQKYSESQNNSSSVINGLNQPSITTSNQYLTPLQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASGDKSHPNINLNSDRSDLASSEN | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 335438 | 339951 | + | CmaCh07G000620.1 | Cma07g00062 | 297377 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00062 | 262 | Gene3D | - | 168 | 229 | - | - | |
Cma07g00062 | 262 | PRINTS | CCAAT-binding transcription factor subunit B signature | 171 | 193 | IPR001289 | GO:0003700|GO:0006355 | |
Cma07g00062 | 262 | PRINTS | CCAAT-binding transcription factor subunit B signature | 202 | 225 | IPR001289 | GO:0003700|GO:0006355 | |
Cma07g00062 | 262 | MobiDBLite | consensus disorder prediction | 21 | 46 | - | - | |
Cma07g00062 | 262 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 58 | 244 | IPR001289 | GO:0003700|GO:0006355 | |
Cma07g00062 | 262 | MobiDBLite | consensus disorder prediction | 223 | 262 | - | - | |
Cma07g00062 | 262 | ProSiteProfiles | NF-YA/HAP2 family profile. | 168 | 228 | IPR001289 | GO:0003700|GO:0006355 | |
Cma07g00062 | 262 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 170 | 225 | IPR001289 | GO:0003700|GO:0006355 | |
Cma07g00062 | 262 | SMART | cbf3 | 167 | 228 | IPR001289 | GO:0003700|GO:0006355 | |
Cma07g00062 | 262 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 173 | 193 | IPR018362 | GO:0003677|GO:0016602 | |
Cma07g00062 | 262 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 58 | 244 | - | - | |
Cma07g00062 | 262 | MobiDBLite | consensus disorder prediction | 227 | 262 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00062 | Cma-Chr7:335438 | Cma05g01413 | Cma-Chr5:10511813 | 1.28E-36 | dispersed | |
Cma03g01447 | Cma-Chr3:9056189 | Cma07g00062 | Cma-Chr7:335438 | 9.46E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35315 | PF02045 | CBFB_NFYA | 6.40E-26 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00062 | K08064 | - | csv:101205549 | 342.813 |