Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00062 ATGGCCGCTCAGACACGCGGCAGGATTCTAGAAATTCTGTCCCCTTTCCTCAAACTAAGAAATCAAGAAGAAACACAGAAGACGAAAAAACGGCTACAAGACTCACAGTCATCAGCTTCAGCAGACAGAATTCCCGCTTTCCAGGTTTCACGTGGTGTTCACTACAACCCGATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATAAGCTGCAAAAGTACTCTGAATCTCAGAATAATTCTTCATCAGTCATTAATGGACTAAATCAACCCAGCATCACAACCTCAAATCAGTATTTAACACCTCTACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTATAGAAGCATCTTTTCTCCTTATGATGCTCAACCGTATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTGCAGTTGATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTGCGACGTAGACAGTCCCGTGCAAAGGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCGTCAGGTGATAAATCACACCCCAATATAAATCTTAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGAACTGA 789 43.22 MAAQTRGRILEILSPFLKLRNQEETQKTKKRLQDSQSSASADRIPAFQVSRGVHYNPMTSSVHDYSDNGEADKLQKYSESQNNSSSVINGLNQPSITTSNQYLTPLQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASGDKSHPNINLNSDRSDLASSEN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 335438 339951 + CmaCh07G000620.1 Cma07g00062 297377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00062 262 Gene3D - 168 229 - -
Cma07g00062 262 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 MobiDBLite consensus disorder prediction 21 46 - -
Cma07g00062 262 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 58 244 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 MobiDBLite consensus disorder prediction 223 262 - -
Cma07g00062 262 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 SMART cbf3 167 228 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677|GO:0016602
Cma07g00062 262 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 58 244 - -
Cma07g00062 262 MobiDBLite consensus disorder prediction 227 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00062 Cma-Chr7:335438 Cma05g01413 Cma-Chr5:10511813 1.28E-36 dispersed
Cma03g01447 Cma-Chr3:9056189 Cma07g00062 Cma-Chr7:335438 9.46E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35315 PF02045 CBFB_NFYA 6.40E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00062 K08064 - csv:101205549 342.813