Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00062 ATGGCCGCTCAGACACGCGGCAGGATTCTAGAAATTCTGTCCCCTTTCCTCAAACTAAGAAATCAAGAAGAAACACAGAAGACGAAAAAACGGCTACAAGACTCACAGTCATCAGCTTCAGCAGACAGAATTCCCGCTTTCCAGGTTTCACGTGGTGTTCACTACAACCCGATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATAAGCTGCAAAAGTACTCTGAATCTCAGAATAATTCTTCATCAGTCATTAATGGACTAAATCAACCCAGCATCACAACCTCAAATCAGTATTTAACACCTCTACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTATAGAAGCATCTTTTCTCCTTATGATGCTCAACCGTATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTGCAGTTGATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTGCGACGTAGACAGTCCCGTGCAAAGGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCGTCAGGTGATAAATCACACCCCAATATAAATCTTAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGAACTGA 789 43.22 MAAQTRGRILEILSPFLKLRNQEETQKTKKRLQDSQSSASADRIPAFQVSRGVHYNPMTSSVHDYSDNGEADKLQKYSESQNNSSSVINGLNQPSITTSNQYLTPLQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASGDKSHPNINLNSDRSDLASSEN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 335438 339951 + CmaCh07G000620.1 Cma07g00062 297377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00062 262 Gene3D - 168 229 - -
Cma07g00062 262 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 MobiDBLite consensus disorder prediction 21 46 - -
Cma07g00062 262 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 58 244 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 MobiDBLite consensus disorder prediction 223 262 - -
Cma07g00062 262 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 SMART cbf3 167 228 IPR001289 GO:0003700|GO:0006355
Cma07g00062 262 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677|GO:0016602
Cma07g00062 262 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 58 244 - -
Cma07g00062 262 MobiDBLite consensus disorder prediction 227 262 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00062 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 342.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00062 Cma-Chr7:335438 Cma05g01413 Cma-Chr5:10511813 1.28E-36 dispersed
Cma03g01447 Cma-Chr3:9056189 Cma07g00062 Cma-Chr7:335438 9.46E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma20g00089 CCT,CST,ECH 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.7 2.1e-55 213.4
Cma02g01253 . 139 392 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 1.7e-54 210.3
Cma10g00928 CCT,ECH 23 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 3.2e-48 189.5
Cma02g01253 . 228 462 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 1.9e-49 193.7
Cma20g00089 CCT,CST,ECH 105 343 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.2 6.7e-47 185.3
Cma11g00848 CCT,CST,ECH 1 244 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.0 3.3e-46 183.0
Cma10g00928 CCT,ECH 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 6.2e-45 178.7
Cma07g00062 . 58 260 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.7 8.5e-48 187.6
Cma03g01447 . 42 221 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.4 5.3e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35315 PF02045 CBFB_NFYA 6.40E-26 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00062 Cma_Chr07 FPKM 4.070111 4.422644 7.029055 6.206936 6.431872 6.01853 5.397895 2.545625 1.917272 2.56566