Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00063 ATGAAGGAGAGAGGAGGCTCTCTTGGAGGAGAGAGCCTGCCCGTTCGTTTCAAAAGGTTCATGGCGCTTGTAATGCACAAAGACTCATCAAACCAACAGATGGATACGAGCAAATACGTACGGTATACACCTGAACAAGTTGAGGCATTAGAGAGAGTCTATGCAGAATGTCCAAAGCCCAGTTCTCTTAGAAGGCAGCAGCTCATTAGAGAGTGTCCAATCCTTTCTAATATTGAGCCCAAACAGATCAAAGTTTGGTTTCAAAACCGCAGATGCCGGGAGAAGCAGAGGAAGGAATCTTCTCGACTCCAGAGCGTAAACCGAAAGTTGTCTGCGATGAACAAGTTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTAGTGTATGAGAATGGATTTATGCGCCAGCAACTTCATAGTACATCTGGGACGACTACAGACAACAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATTCTAACAGGGATGCAAACAACCCAGCTGGTCTTCTTGCAATAGCCGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCGAGAGCCTGTGGTCTTGTTAGTCTAGAGCCAATGAAGGTTGCCGAAATTCTTAAAGATCGCCTTTCATGGTATCGTGACTGTCGCTGTCTTAATGTTTTTAGTGTAATCCCTACTGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTACGCTCCAACAACATTAGCAGCTGCACGTGACTTCTGGACCATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTCTGTGAAAGGTCATTAACTACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTGAGAGCTGAAATGCTTCCTAGTGGTTATCTAATACGAGCATGCGAGGGTGGTGGATCTATTATTCACATTGTTGACCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGACCGCTTTACGAGTCATCCAAGATCCTTGCTCAGAAAATGACGATCGCTGCATTGCGTCACATTAGACAAATTGCACAAGAGACTAATGGAGAGATCCAATATAGCGGGGGACGTCAACCAGCTGTATTACGAACGTTTGGTCAGAAACTCTGCAGGGGTTTCAACGACGCTGTTAATGGGTTTGTGGATGATGGTTGGTCAGCTATGAGCAGTGATGGTTTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTACCTGGGTCACAGTATAAAACGTCTATGTATCCCTCTTTTGGTGGAGTGATGTGTGCAAAAGCATCAATGTTGCTTCAGAATGTGCCTCCTGCTTTGCTTATTCGATTCTTGAGGGAGCATCGATCTGAATGGGCTGATTATGGAGTTGATACCTACTCCGCCGCAAGTTTAAAAGCCAGTCCATATGCTGTTCCATGCGCAAGGCCGGGTGGTTTCCCTAGCAACCAGGTTATTTTGCCTCTTGCTCACACTGTGGAGCACGTAGAGTTTCTGGAGGTGGTTCGGCTGGAGGGCCTTGCATTCTCCCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAATGGAGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCGCCTATAGATGAATCTTTTGCCGATGATGCTCCTTTACTTCCTTCTGGTTTTCGTGTCATACCCCTGGATCCAAAAACGGATGAGCCCACTGCTAATCGAACATTGGATTTGGCTTCTACTCTTGAAGTCGGTGCCAACGGTGCACGCTCTGGTGGTGAAGCTGATTTGAGCACCTACAACCTCCGGTCGGTCTTGACTATTGCCTTCCAGTTCACTTTTGAGAATCACTTACAGGAAAATGTGGCTGCTATGGCTCGACAATACGTTCGTAGCGTTGTGGGGTCTGTTCAGAGGGTTGCTATGGCCATTGCCCCATCACAGTTGAGTTCCAATATTGGACTAAAACCCCTTCCTGGTTCTCCTGAAGCTCTTACTTTGGGTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGCTGAGCTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGCAGCTCTGGCACCACTCAGATGCAATCATGTGTTGCTCCGTCAAAGCCAACGCATCTGCTGTGTTCACCTTTGCCAACCAGGCCGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTCGACGAAGCGGGTCGGAAGATCCTCTGTTCTGAATTCCCCAAAATAATGCAGCAGGGATTCACAAATCTGCCATCTGGCATTTGCATATCGAGTATGGGTCGTCCTATTTCTTACGAGCAAGGCGTTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTGGCTTTCATGTTCATAAACTGGTCTTTTGTGTGA 2601 47.25 MKERGGSLGGESLPVRFKRFMALVMHKDSSNQQMDTSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGFMRQQLHSTSGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPMKVAEILKDRLSWYRDCRCLNVFSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQYSGGRQPAVLRTFGQKLCRGFNDAVNGFVDDGWSAMSSDGLEDVTIVINSSANKLPGSQYKTSMYPSFGGVMCAKASMLLQNVPPALLIRFLREHRSEWADYGVDTYSAASLKASPYAVPCARPGGFPSNQVILPLAHTVEHVEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCNGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTANRTLDLASTLEVGANGARSGGEADLSTYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAIAPSQLSSNIGLKPLPGSPEALTLGRWICRSYRIHVGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKANASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFTNLPSGICISSMGRPISYEQGVAWKVLNDDDSNHCLAFMFINWSFV 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 343575 348634 + CmaCh07G000630.1 Cma07g00063 297378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00063 866 CDD homeodomain 38 98 IPR001356 GO:0003677
Cma07g00063 866 Gene3D - 29 105 - -
Cma07g00063 866 MobiDBLite consensus disorder prediction 142 179 - -
Cma07g00063 866 ProSiteProfiles 'Homeobox' domain profile. 33 97 IPR001356 GO:0003677
Cma07g00063 866 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 25 866 - -
Cma07g00063 866 Pfam START domain 187 394 IPR002913 GO:0008289
Cma07g00063 866 CDD bZIP 90 129 - -
Cma07g00063 866 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 25 866 IPR044830 GO:0003700
Cma07g00063 866 SMART START_1 186 396 IPR002913 GO:0008289
Cma07g00063 866 ProSiteProfiles START domain profile. 177 405 IPR002913 GO:0008289
Cma07g00063 866 SUPERFAMILY Bet v1-like 187 398 - -
Cma07g00063 866 Pfam Homeodomain 38 96 IPR001356 GO:0003677
Cma07g00063 866 Pfam MEKHLA domain 722 865 IPR013978 -
Cma07g00063 866 Gene3D - 220 404 IPR023393 -
Cma07g00063 866 SUPERFAMILY Homeodomain-like 38 99 IPR009057 -
Cma07g00063 866 Coils Coil 103 127 - -
Cma07g00063 866 SMART HOX_1 35 101 IPR001356 GO:0003677
Cma07g00063 866 CDD START_ArGLABRA2_like 181 397 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00063 Cma13g00495 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00895 Cma-Chr2:5310591 Cma07g00063 Cma-Chr7:343575 0 dispersed
Cma07g00063 Cma-Chr7:343575 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma13g00495 Cma-Chr13:5295933 Cma07g00063 Cma-Chr7:343575 0 wgd
Cma03g01446 Cma-Chr3:9047294 Cma07g00063 Cma-Chr7:343575 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35316 PF01852 START 1.10E-48 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00063 K09338 - csv:101210154 1587.01