Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00079 ATGTATTTTATTGACTTTGGTGCTTCAAATTTGGGGGTCAATAGTTCATTGGGTTTGTTGGATCTCACTGAAATGAGGCTTTCAGCTGCTGGTTTCAATCCTCAGCCTCCGGAAGGGGAGAAGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTATCTCTACCTGCTGTTGGAAGTCGGGCTGTTTACTTTCCACAGGGTCACAGCGAGCAGGTAGCCATATCAACCAACAAAGAAGTGGATGCCCATATACCAAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTTACCATGCATGCAGATATCGAGACGGACGAAGTTTATGCTCAGATGACCTTGCAACCGCTCAGTGCTCAAGAGCAAAAGGAGCCATATCTTCCATCTGAGTTGGGTGCTCCAAGCAAACAACCGACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACGCATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTTTTTCCTCCATTGGACTTTACTCAACAGCCACCTGCTCAGGAGTTGATGGCAAGGGATCTGCACGATAACGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGTGATTCTGTGATCTTTATTTGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAGCCGACCACAAGCAATGATGCCCTCATCGGTCTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGAGCTAGCCCATCAGAGTTTATCATTCCTCTGGCTAAGTATGTCAAAGCTGTGTACCATACCCGTGTTACTGTCGGTATGCGTTTTAGAATGCTATTTGAAACCGAAGAATCAAGTGTTCGTCGATACATGGGCACTATTACTGGCATCAGTGACTTAGATCCTGCTCGATGGCCAAACTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGTGAGAGACAGCCAAGGGTTTCGTTATGGGAGATCGAGCCACTAACAACCTTCCCGATGTATCCGTCTCCGTTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTGCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAACTCACAACTAATGTGGCTACGGGGAGACGCTCTAGATCGTGGAATTCAACCTCTGAACCTCCATGGAATCGGAGTTGCACCATGGATGCAGCCGAGGCTCGATGCTTCCATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACCGTTGATCCTGCTAAGGCACAGGCGGCATCGCTTCTTCAGTTCCAACAAACCCAAAATCTTCCCAACAGGCCTGCTACTTTCATGTCACCTCAGATGTTGCAGCAGCCTCAGCCTCAGCCTCACCAGACCTTTCTCCAAAATGATCATGAAATCCAACATCTCCCTCATTCTCAGGCCCCAACCCAGCCTACCGTTCTTCGACATGAGATGAAGCATCAGACATTCAACGAGCAGCAGCAGCAGCAGCAGCCACAACAGCAAGTGTTTGATCACCAACAAATTCCGAGTAGCATCTCTAAAATGACACAGTTCGGTTCGGTATCCCAATCCCTGCAAACTATTCCTTCATTTTGCAGGCAGCAGAGTTTTTCTGATTCAAATGGCATCCATATGACAAATCCTATCATTTCACCATTGCACAGCCTGTTAGGTTCATTTTCGCAAGATGAAACGTCTCAGCTACTTAATCTGCCTAGAACACATCCCATGATACATTCATCTACGTGGCCATCAAAGCGAGCTGCAATCGATCCTCTTATCTCTTCTGGAAATTCTCAGTTTGTTCATTTCCAAGAGGAAAATATGGGGACAGCTCAGGCTACTATCTCTCAGAATGTTTCTTTGCCGCCGTTTCCTGGTAGAGAGTGTTCATTAGATCAAAGGAATGGTGACCCGCAGAGTAATCTTCTATTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGTATGCCAAATATTAGGGGAATTTGCAGTGACAGTGACACAACAGCGATACCGTTTTCGTCCAATTATGTGAATACTGCTGGTACCAACTTCTCTGCCAATCCAGCTGGGACACCTTCCAATTGCATTGAGGATTCGGGTTTCTTGCCAAATTTCGTAAAGGTTTACAAGTCGGGGACCTTCGGTAGATCACTGGATATTTCGAAATTCAGTAGCTACCATCAGTTACGCAGTGAGCTCGCTCACAAGTTCAATCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCAGGAGTTTGTCAACAGTGTGTGGTATATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAGGATTGTTAGCTATGCTGATAGACAGGAGTCGTCCAGAAATTTGAGTAGCGGGATAACTTCTGTCGGGTCGCTCGAGTACTGA 2664 46.85 MYFIDFGASNLGVNSSLGLLDLTEMRLSAAGFNPQPPEGEKRVLNSELWHACAGPLVSLPAVGSRAVYFPQGHSEQVAISTNKEVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSAQEQKEPYLPSELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRASRPQAMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVTVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGLKEDDLGLNSQLMWLRGDALDRGIQPLNLHGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPATFMSPQMLQQPQPQPHQTFLQNDHEIQHLPHSQAPTQPTVLRHEMKHQTFNEQQQQQQPQQQVFDHQQIPSSISKMTQFGSVSQSLQTIPSFCRQQSFSDSNGIHMTNPIISPLHSLLGSFSQDETSQLLNLPRTHPMIHSSTWPSKRAAIDPLISSGNSQFVHFQEENMGTAQATISQNVSLPPFPGRECSLDQRNGDPQSNLLFGVNIEPSSLLMQNGMPNIRGICSDSDTTAIPFSSNYVNTAGTNFSANPAGTPSNCIEDSGFLPNFVKVYKSGTFGRSLDISKFSSYHQLRSELAHKFNLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNSVWYIKILSPQEVQEMGRIVSYADRQESSRNLSSGITSVGSLEY 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 469263 474798 + CmaCh07G000790.1 Cma07g00079 297394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00079 887 Gene3D - 315 387 - -
Cma07g00079 887 PANTHER AUXIN RESPONSE FACTOR 6 25 861 - -
Cma07g00079 887 Gene3D - 149 252 IPR015300 -
Cma07g00079 887 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 861 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma07g00079 887 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Cma07g00079 887 SUPERFAMILY DNA-binding pseudobarrel domain 136 280 IPR015300 -
Cma07g00079 887 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Cma07g00079 887 SUPERFAMILY CAD & PB1 domains 773 846 - -
Cma07g00079 887 CDD B3_DNA 150 251 IPR003340 GO:0003677
Cma07g00079 887 Pfam AUX/IAA family 771 856 IPR033389 -
Cma07g00079 887 ProSiteProfiles PB1 domain profile. 771 856 IPR000270 GO:0005515
Cma07g00079 887 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma07g00079 887 Gene3D - 769 860 - -
Cma07g00079 887 SMART B3_2 151 253 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02256 Cma-Chr4:15752330 Cma07g00079 Cma-Chr7:469263 0 dispersed
Cma07g00079 Cma-Chr7:469263 Cma15g00776 Cma-Chr15:3829460 0 dispersed
Cma15g00461 Cma-Chr15:2049668 Cma07g00079 Cma-Chr7:469263 3.13E-76 dispersed
Cma13g00511 Cma-Chr13:5418480 Cma07g00079 Cma-Chr7:469263 0 wgd
Cma18g00491 Cma-Chr18:2810959 Cma07g00079 Cma-Chr7:469263 0 wgd
Cma03g01429 Cma-Chr3:8950035 Cma07g00079 Cma-Chr7:469263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35318 PF02309 AUX_IAA 9.70E-06 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00079 - - csv:101210406 1493.79