Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00117 ATGGACGTGGGTGAAGAAATTAGGGCAGCTCACAAGAGAGACTTTTTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAATCCATGATTAATCATAAGCGACATCGCCTTATAATCAACATTTCCGATCTTCACTCTTTCAGAGATCTTGGTCCCAGGGTGCTCAGGAATCCCGGAGAGTACATTCAGCCATTCTGCGATGCAGTCACAGAAACTGCTCGCAGTATTGATCCAAAATATCTCAAGGAGGGAGAGCATGTTTTGGTGGGTTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCTAGGGAACTTCTCTCTCAGTTCATTGGCTCCATGGTCTGCGTTGAGGGCATTGTCACCAAATGTTCCCTTGTCAGACCAAAAGTCGTCAAAAGTGTTCATTTCTGCCCCACAACCGGTGGTTTTACCAGCCGTGAATACCGTGACATTGCATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGAAAATGGCAACTTGTTGGTTACCGAGTATGGCTTGTGTAGATACAAAGATCATCAGACCTTATCGATGCAAGAAATGCCTGAGAATTCAGCGCCTGGTCAGCTTCCACGAACAGTGGATGTCATAGTCGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCAATTGTAGGAATATATAAAGCTCTTCCTGGAAAAAGCAAGGGCAGCGTGAATGGAGTGTTCAGGACTGTTCTTGTAGCTAACAATGTTTCTCTGCTAAACAAAGAGGCAAATGCACCCATATACAGTCCCGAGGACTTGAAGAATATTAAAAAGATAGCCGAAAGAGATGACACATTTGACCTTCTTGGTAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCAGTGATACTATTGATGCTTGGTGGAGTGGAGAAGAACTTGAAGAACGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTCGCCAAGTCTCAACTTTTAAGGGCGATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAAAGAAGGCTTGAAGCTGGTGCAATGGTTCTTGCTGATAGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAACGCTCGGTGCAGTGTAGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGCTCATTGACACCAACAAAGAATATAGGTCTTCCAGACTCCCTACTCTCTCGATTTGATCTATTGTTTATTGTACTGGATCAAATGGATCCTGATATTGATCGCCATATTTCGGAACATGTGTTACGTATGCACCGGTATCGTTCTGTACTTGATGGAGGAGAGGCTGGGGGCTCGATGTATGGAAGAGAAGATGAAGCTGAGGCTGACACTTCTGTCTTCGTCAAGTATAATAGAATGCTTCATGGAAAGAAGACAGAACGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTCAAGAAGTATATACATTATGCTAAGCATAGGATACAACCCGACCTAACTGATGAGACTGGAGGAACTCTTCCAATGACTGCCAGAACTCTAGAAACCATTATACGTCTCTCAACTGCTCATGCAAAATTGAAGTTGAGTAGAAAGGTTTCAATGTCTGATGTTGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAACGCCGAGATGAGCATCAAACAGTGGAAAATGATGAACCAGAACGAAGTACCAAAAGAAGAGAGGAGAGCTCAAGGACAGACACCATGGAAATCGATGATCCTCTTACCGAACCTGTACTCGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTATATCTATTGCCGACGTTGAGAAAATCGTTAATGCTGCAGCAGATACTCGTTACACTACAGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATAGCGTGGTGCATATGATATCATGA 2262 43.59 MDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKSMINHKRHRLIINISDLHSFRDLGPRVLRNPGEYIQPFCDAVTETARSIDPKYLKEGEHVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDIASNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDETGGTLPMTARTLETIIRLSTAHAKLKLSRKVSMSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRDEHQTVENDEPERSTKRREESSRTDTMEIDDPLTEPVLDLSAERIEAFNSLFGQHMRANHLDLISIADVEKIVNAAADTRYTTAEIMLLLQRLQDDNRVMIADSVVHMIS 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 626424 631825 - CmaCh07G001170.1 Cma07g00117 297432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma07g00117 753 PANTHER DNA HELICASE 3 745 - -
Cma07g00117 753 Gene3D - 5 99 - -
Cma07g00117 753 Coils Coil 621 647 - -
Cma07g00117 753 Gene3D - 271 641 IPR027417 -
Cma07g00117 753 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 745 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 632 IPR027417 -
Cma07g00117 753 SMART mcm 104 620 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 SUPERFAMILY Nucleic acid-binding proteins 13 258 IPR012340 -
Cma07g00117 753 MobiDBLite consensus disorder prediction 627 676 - -
Cma07g00117 753 Gene3D - 135 189 - -
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 Pfam MCM AAA-lid domain 575 616 IPR041562 -
Cma07g00117 753 Gene3D - 109 239 IPR012340 -
Cma07g00117 753 Pfam MCM OB domain 109 239 IPR033762 -
Cma07g00117 753 SMART AAA_5 331 484 IPR003593 -
Cma07g00117 753 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma07g00117 753 MobiDBLite consensus disorder prediction 627 673 - -
Cma07g00117 753 Pfam MCM N-terminal domain 12 83 IPR027925 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01388 Cma07g00117 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00117 Cma-Chr7:626424 Cma17g01031 Cma-Chr17:7473100 3.50E-110 dispersed
Cma03g01388 Cma-Chr3:8775195 Cma07g00117 Cma-Chr7:626424 6.82E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00117 K02541 - csv:101210889 1371.3