Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00117 ATGGACGTGGGTGAAGAAATTAGGGCAGCTCACAAGAGAGACTTTTTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAATCCATGATTAATCATAAGCGACATCGCCTTATAATCAACATTTCCGATCTTCACTCTTTCAGAGATCTTGGTCCCAGGGTGCTCAGGAATCCCGGAGAGTACATTCAGCCATTCTGCGATGCAGTCACAGAAACTGCTCGCAGTATTGATCCAAAATATCTCAAGGAGGGAGAGCATGTTTTGGTGGGTTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCTAGGGAACTTCTCTCTCAGTTCATTGGCTCCATGGTCTGCGTTGAGGGCATTGTCACCAAATGTTCCCTTGTCAGACCAAAAGTCGTCAAAAGTGTTCATTTCTGCCCCACAACCGGTGGTTTTACCAGCCGTGAATACCGTGACATTGCATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGAAAATGGCAACTTGTTGGTTACCGAGTATGGCTTGTGTAGATACAAAGATCATCAGACCTTATCGATGCAAGAAATGCCTGAGAATTCAGCGCCTGGTCAGCTTCCACGAACAGTGGATGTCATAGTCGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCAATTGTAGGAATATATAAAGCTCTTCCTGGAAAAAGCAAGGGCAGCGTGAATGGAGTGTTCAGGACTGTTCTTGTAGCTAACAATGTTTCTCTGCTAAACAAAGAGGCAAATGCACCCATATACAGTCCCGAGGACTTGAAGAATATTAAAAAGATAGCCGAAAGAGATGACACATTTGACCTTCTTGGTAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCAGTGATACTATTGATGCTTGGTGGAGTGGAGAAGAACTTGAAGAACGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTCGCCAAGTCTCAACTTTTAAGGGCGATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAAAGAAGGCTTGAAGCTGGTGCAATGGTTCTTGCTGATAGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAACGCTCGGTGCAGTGTAGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGCTCATTGACACCAACAAAGAATATAGGTCTTCCAGACTCCCTACTCTCTCGATTTGATCTATTGTTTATTGTACTGGATCAAATGGATCCTGATATTGATCGCCATATTTCGGAACATGTGTTACGTATGCACCGGTATCGTTCTGTACTTGATGGAGGAGAGGCTGGGGGCTCGATGTATGGAAGAGAAGATGAAGCTGAGGCTGACACTTCTGTCTTCGTCAAGTATAATAGAATGCTTCATGGAAAGAAGACAGAACGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTCAAGAAGTATATACATTATGCTAAGCATAGGATACAACCCGACCTAACTGATGAGACTGGAGGAACTCTTCCAATGACTGCCAGAACTCTAGAAACCATTATACGTCTCTCAACTGCTCATGCAAAATTGAAGTTGAGTAGAAAGGTTTCAATGTCTGATGTTGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAACGCCGAGATGAGCATCAAACAGTGGAAAATGATGAACCAGAACGAAGTACCAAAAGAAGAGAGGAGAGCTCAAGGACAGACACCATGGAAATCGATGATCCTCTTACCGAACCTGTACTCGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTATATCTATTGCCGACGTTGAGAAAATCGTTAATGCTGCAGCAGATACTCGTTACACTACAGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATAGCGTGGTGCATATGATATCATGA 2262 43.59 MDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKSMINHKRHRLIINISDLHSFRDLGPRVLRNPGEYIQPFCDAVTETARSIDPKYLKEGEHVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDIASNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDETGGTLPMTARTLETIIRLSTAHAKLKLSRKVSMSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRDEHQTVENDEPERSTKRREESSRTDTMEIDDPLTEPVLDLSAERIEAFNSLFGQHMRANHLDLISIADVEKIVNAAADTRYTTAEIMLLLQRLQDDNRVMIADSVVHMIS 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 626424 631825 - CmaCh07G001170.1 Cma07g00117 297432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma07g00117 753 PANTHER DNA HELICASE 3 745 - -
Cma07g00117 753 Gene3D - 5 99 - -
Cma07g00117 753 Coils Coil 621 647 - -
Cma07g00117 753 Gene3D - 271 641 IPR027417 -
Cma07g00117 753 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 745 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 632 IPR027417 -
Cma07g00117 753 SMART mcm 104 620 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 SUPERFAMILY Nucleic acid-binding proteins 13 258 IPR012340 -
Cma07g00117 753 MobiDBLite consensus disorder prediction 627 676 - -
Cma07g00117 753 Gene3D - 135 189 - -
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma07g00117 753 Pfam MCM AAA-lid domain 575 616 IPR041562 -
Cma07g00117 753 Gene3D - 109 239 IPR012340 -
Cma07g00117 753 Pfam MCM OB domain 109 239 IPR033762 -
Cma07g00117 753 SMART AAA_5 331 484 IPR003593 -
Cma07g00117 753 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma07g00117 753 MobiDBLite consensus disorder prediction 627 673 - -
Cma07g00117 753 Pfam MCM N-terminal domain 12 83 IPR027925 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00117 K02541 MCM3; DNA replication licensing factor MCM3 [EC:5.6.2.3] - csv:101210889 1371.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g01388 Cma07g00117 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00117 Cma-Chr7:626424 Cma17g01031 Cma-Chr17:7473100 3.50E-110 dispersed
Cma03g01388 Cma-Chr3:8775195 Cma07g00117 Cma-Chr7:626424 6.82E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g382 . . Bda02g00085 . . Bpe01g00814 . . . . Cma03g01388 Cma07g00117 . Car07g00104 Sed14g1703 . . Bhi03g00062 Tan03g2685 Cmetu01g2697 . Hepe04g1984 . . Cla01g02393 Cam01g2506 Cec04g2153 Cco04g2230 . Cmu01g2390 . . . . Cone9ag0904 . Csa06g03777 . Cme08g00150 . . . . . . . . . Cmo03g01381 Cmo07g00117 . . . . . . . . . . . . . . . . . . . . . . Chy02g00156 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma09g01213 . 106 793 Core DNA Replication Machinery Family AT4G14700 67.2 9.8e-271 930.2
Cma09g01213 . 73 793 Core DNA Replication Machinery Family AT4G12620 67.7 1.1e-282 969.9
Cma12g00526 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 1.3e-142 503.4
Cma04g01092 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 4.2e-156 548.5
Cma17g00438 . 92 588 Core DNA Replication Machinery Family AT4G29910 58.3 3.6e-163 572.4
Cma05g00856 . 1 261 Core DNA Replication Machinery Family AT1G26840 67.8 3.7e-92 335.5
Cma06g01701 CST 1031 1774 Core DNA Replication Machinery Family AT1G79150 56.9 8.6e-230 794.3
Cma06g01755 . 218 1156 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1344.3
Cma14g01060 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1337.0
Cma07g00117 CST 1 572 Core DNA Replication Machinery Family AT5G46280 81.5 3.2e-268 921.4
Cma03g01388 CST 1 224 Core DNA Replication Machinery Family AT5G46280 54.4 9.2e-66 248.8
Cma19g00684 . 20 884 Core DNA Replication Machinery Family AT2G16440 75.1 0.0e+00 1149.4
Cma11g01087 . 107 738 Core DNA Replication Machinery Family AT2G16440 64.9 3.9e-262 901.7
Cma12g01169 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.6 0.0e+00 1116.3
Cma07g00004 . 523 1345 Core DNA Replication Machinery Family AT5G44635 72.8 0.0e+00 1189.9
Cma17g01031 . 8 719 Core DNA Replication Machinery Family AT4G02060 85.8 0.0e+00 1221.8
Cma08g00472 . 11 690 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1152.9
Cma20g00352 . 30 509 Core DNA Replication Machinery Family AT2G29680 59.8 1.1e-158 557.4
Cma20g00352 . 30 479 Core DNA Replication Machinery Family AT1G07270 59.1 2.4e-144 509.6
Cma08g00225 . 238 830 Core DNA Replication Machinery Family AT3G25100 76.1 4.4e-260 894.4
Cma17g01271 . 241 833 Core DNA Replication Machinery Family AT3G25100 76.6 2.2e-256 882.1
Cma06g00352 . 39 805 Core DNA Replication Machinery Family AT3G09660 74.4 0.0e+00 1109.7
Cma19g00466 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.3 1.0e-286 983.0
Cma20g00753 . 1 398 Core DNA Replication Machinery Family AT2G20980 55.0 8.3e-114 407.9
Cma09g00770 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.1 6.7e-261 897.9
Cma08g00461 CST 25 146 Core DNA Replication Machinery Family AT4G02110 56.5 4.5e-38 157.9
Cma08g00673 . 1 192 Core DNA Replication Machinery Family AT1G80190 66.5 5.2e-72 268.1
Cma07g01186 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 3.1e-61 231.9
Cma04g02907 . 1103 1270 Core DNA Replication Machinery Family AT1G19080 61.3 1.7e-53 206.5
Cma04g02907 . 1103 1270 Core DNA Replication Machinery Family AT3G55490 61.3 1.7e-53 206.5
Cma14g02049 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.7e-52 201.4
Cma02g00514 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1763.4
Cma18g00719 . 2 620 Core DNA Replication Machinery Family AT1G67630 63.8 1.8e-224 776.2
Cma08g00169 . 498 940 Core DNA Replication Machinery Family AT1G67320 65.3 1.8e-182 636.3
Cma09g01290 . 39 477 Core DNA Replication Machinery Family AT5G41880 65.3 1.1e-175 613.6
Cma07g00817 . 1 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1807.7
Cma14g00418 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.6 1.7e-205 712.6
Cma08g00169 . 498 940 Core DNA Replication Machinery Family AT1G67320 65.3 1.8e-182 636.3
Cma02g01335 . 1 2094 Core DNA Replication Machinery Family AT1G08260 70.4 0.0e+00 2946.0
Cma02g01335 . 9 2200 Core DNA Replication Machinery Family AT2G27120 67.4 0.0e+00 2919.4
Cma01g00753 . 529 1044 Core DNA Replication Machinery Family AT5G22110 65.8 1.5e-192 669.8
Cma02g01296 . 1 928 Core DNA Replication Machinery Family AT5G22010 62.4 3.1e-305 1045.0
Cma20g00138 CCT,ECH 67 182 Core DNA Replication Machinery Family AT5G22010 64.1 7.2e-36 150.2
Cma16g01020 . 1 333 Core DNA Replication Machinery Family AT1G63160 89.5 7.3e-172 600.5
Cma03g00215 . 1 335 Core DNA Replication Machinery Family AT5G27740 83.3 1.7e-166 582.8
Cma01g01369 . 1 336 Core DNA Replication Machinery Family AT1G21690 80.7 6.4e-152 534.3
Cma15g00666 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.3 6.5e-153 537.7
Cma04g02374 . 1 363 Core DNA Replication Machinery Family AT1G77470 73.0 2.1e-148 522.7
Cma05g01409 . 26 604 Core DNA Replication Machinery Family AT2G06510 68.8 1.8e-245 845.9
Cma06g00602 CST 34 701 Core DNA Replication Machinery Family AT2G06510 52.2 6.2e-201 698.0
Cma16g01216 CST 34 661 Core DNA Replication Machinery Family AT2G06510 52.1 9.3e-189 657.5
Cma11g00209 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.3 3.8e-243 838.2
Cma06g00602 CST 10 808 Core DNA Replication Machinery Family AT5G45400 51.1 6.3e-228 788.1
Cma16g01216 CST 10 661 Core DNA Replication Machinery Family AT5G45400 54.5 1.0e-206 717.6
Cma11g00209 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.4 3.6e-236 815.1
Cma06g00602 CST 5 822 Core DNA Replication Machinery Family AT4G19130 53.1 2.1e-230 796.2
Cma16g01216 CST 5 661 Core DNA Replication Machinery Family AT4G19130 58.8 2.8e-214 742.7
Cma11g01183 . 1 376 Core DNA Replication Machinery Family AT5G26680 85.7 1.6e-184 642.9
Cma14g01944 . 1 1102 Core DNA Replication Machinery Family AT1G08840 51.8 8.7e-296 1013.8
Cma14g01473 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.3 2.4e-115 412.5
Cma20g00522 . 44 804 Core DNA Replication Machinery Family AT1G08130 68.3 1.2e-292 1003.0
Cma20g00522 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.4 8.0e-239 823.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011182 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00117 Cma_Chr07 FPKM 10.850616 10.909842 6.208469 4.958821 29.204821 32.616714 29.804169 2.191729 2.138595 1.934639